Factsheet for Os02t0593700-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os08t0398800-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24690.1	Os08t0398800-02	AT4G29820.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G053250.1	Barley	cytosol	65.44	64.38
TraesCS6B01G236800.1	Wheat	cytosol	66.04	64.36
TraesCS6A01G208300.2	Wheat	nucleus	65.68	63.79
TraesCS6D01G191900.3	Wheat	nucleus	63.55	61.37
PGSC0003DMT400019556	Potato	extracellular	6.98	60.2
EES07083	Sorghum	nucleus	58.22	57.95
Zm00001d017072_P002	Maize	nucleus	55.98	56.18
Zm00001d040272_P001	Maize	plastid	6.51	45.83
GSMUA_AchrUn_...	Banana	extracellular	7.34	41.89
CDY08946	Canola	plastid	31.48	40.99
Os04t0476800-01	Rice	nucleus	40.71	39.05
CDY11029	Canola	plastid	30.65	38.26
Bra019212.1-P	Field mustard	plastid	31.12	38.12
Bra010484.1-P	Field mustard	plastid	30.65	37.98
CDY24845	Canola	plastid	30.3	37.93
CDX92649	Canola	cytosol	30.65	37.48
Bra013825.1-P	Field mustard	plastid	30.77	37.04
CDY34302	Canola	plastid	30.65	36.89
CDY03427	Canola	cytosol	30.65	36.74
Solyc06g071770.2.1	Tomato	nucleus	31.48	36.09
AT4G24690.1	Thale cress	cytosol, nucleus, plastid	30.06	36.08
PGSC0003DMT400069639	Potato	nucleus	31.36	36.05
Solyc03g112230.2.1	Tomato	cytosol, nucleus, plastid	35.03	34.26
PGSC0003DMT400046670	Potato	nucleus	34.56	33.87
KRH57136	Soybean	nucleus	33.85	32.57
VIT_17s0000g09280.t01	Wine grape	nucleus	32.19	31.26
KRH03220	Soybean	nucleus	29.47	30.66

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.3.4.2	Gene3D:2.60.40.10	Gene3D:3.10.20.90	Gene3D:3.30.60.90	EntrezGene:4329846
EMBL:AK099686	ProteinID:BAD16888.1	ProteinID:BAD34095.1	ProteinID:BAF09216.1	ProteinID:BAS79530.1	ProteinID:BAS79531.1
ProteinID:EAZ23647.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016236	GO:GO:0043130	InterPro:IPR000270
InterPro:IPR000433	InterPro:IPR013783	InterPro:IPR015940	InterPro:Ig-like_fold	InterPro:N_BRCA1_central	EnsemblPlantsGene:Os02g0593700
EnsemblPlants:Os02t0593700-01	InterPro:PB1_dom	PFAM:PF00564	PFAM:PF00569	PFAM:PF16158	PFscan:PS50030
PFscan:PS50135	PFscan:PS51745	PANTHER:PTHR20930	PANTHER:PTHR20930:SF3	UniProt:Q6ZH84	SMART:SM00291
SMART:SM00666	SUPFAM:SSF46934	SUPFAM:SSF54277	SUPFAM:SSF57850	InterPro:UBA	InterPro:UBA-like_sf
UniParc:UPI000035AD3F	RefSeq:XP_015625351.1	InterPro:Znf_ZZ	SEG:seg	:	:

Description

Similar to TA4 protein (Fragment). (Os02t0593700-01);Similar to Ubiquitin-associated protein. (Os02t0593700-02);Similar to Ubiquitin-associated protein. (Os02t0593700-03);Similar to TA4 protein (Fragment). (Os02t0593700-04)

Coordinates

chr2:-:22981864..22987590

Molecular Weight (calculated)

92759.3 Da

IEP (calculated)

5.218

GRAVY (calculated)

-0.493

Length

845 amino acids

Sequence
(BLAST)

001: MSGRSSPMYE GLASRPDEWD VVLKVKYGET LKRFGGYVQG PQFSLNLSAL RSKIASAFKF GSDVDFILTY TDEDGDIVML DDDDDLHDAA IHQKLNPLRI
101: NVQLNNSHTA APQAKQQDSD NIPLRSTTTE DPLAHIKSVI DEVLKPISMK SIQEPVPETL AKLSHEVLEA ASPQLAELIK PFVKLVTPSN NNPSNGHADG
201: SCSSSTGLPQ TQVDPKTNDE PKIDTSLGSQ PLDTQNSKSS GARGLKTLSV EAPATSGVKS SQGQQASLYP SIEELLFSPF LPNSGDDKSA SKGISDAQSK
301: GKSVMTSATP PTPPAAPAFR PAPPIPSLND WSQPPARGST FYPSIWQSEA DPKANSDSRW RVPLCRAGHP FQPHAPLSRP PPPMPAPMSY GPSPHFPYPG
401: RLLSSGHLHG DLGNNIENSP ARTFHRWIQC DGCGVQPIVG PRYKSKTKED YDLCDACFHR MGNEVEYTRI DKPLLPQRLL RDPTLCRKIH SRAAMKSKRE
501: KLESRFILDV TVLDGTLMAP STPFTKIWRM HNNGSIMWPL GTQLIWVGGD QFALQTYVPL EIPVDGFPVD QEIDVAVDFV APARPGRYIS YWRLASPSGQ
601: KFGQRVWVHI QVEDPSFVSN NRTAAINLNL PPESNITNTS NLIDVNIEPV DQVFNQHVNS TNKELLEHLI HHQIDEPKNP EPAPLPVPIV SSTTSLHPII
701: DVDVPSSSTA AAFVPVFDEP APEPAVTPVP PTVNVPAGNA PASVGASSSD HHGIDNLTEE KLLKELEEMG FRQVDLNKEI LRQNKYNLEQ SVDDLCGVSE
801: WDPLLEELQE MGFEDTEINK EMLEKNGGSI KRAVMDLIAR EKKDQ

Best Arabidopsis Sequence Match ( AT4G24690.1 )
(BLAST)

001: MESTANALVV KVSYGGVLRR FRVPVKANGQ LDLEMAGLKE KIAALFNLSA DAELSLTYSD EDGDVVALVD DNDLFDVTNQ RLKFLKINVN AGVSTNSAAP
101: ESSGSSTPAG MPNPVSKIQK GINDVLMAVP NPMRDTISKV YMDLASKAST SSPVVGEMLD CISKLGQLSI PQESSPCSPV TKPGSSGASL SRDVPSAGGK
201: KDISERTQTG RKPVNLNEPT GAHSKTSGHV PNSSGLGANF NECPFSGSTM NYSCPNPVNL NKHPRRVCHS KKSTNGDYWT SLGVFHKGIR CDGCGVLPIT
301: GPRFKSKVKE DYDLCTICYS VMGNEGDYTR MDKPVSVQHL HPFRGPFTQF PNPWLSHPVP RATNGGAPLR CTRPKLDSRF VLDVNVIDGT VVAPSAPFTK
401: IWKMRNSGSL VWPQGTQIVW IGGDRFCNSL SVDLQIPKEG VPIYSELDVK VDFVAPELPG RYISYWRMAT SDGAKFGQRV WVLIHVDASL KNSVVNEFHG
501: LNLNASPSLD ENFPSEFLGI MNYESAQPGS SSVNPGTVKG TDLEGEVGET QAVEKENLLV GEAHPAIPHG HSPSSSSSSF NMVDFPSMPA VEVLSGGSSS
601: TTKDVPVPLQ EDIEKNDVEI TMLKELEEMG FKEIDLNKEI LRDNEYNLEQ SVDALCGVSE WDPILEELQE MGFCDDVTNK RLLKKNNGSI KGVVMDLLTG
701: EKEA

Arabidopsis Description

NBR1Protein NBR1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9SB64]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.