Factsheet for Bra019212.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
mitochondrion 2
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra009744.1-P
Bra011138.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24690.1	Bra009744.1-P	AT4G29820.1	21798944
AT4G24690.1	Bra011138.1-P	AT4G29820.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11029	Canola	plastid	92.75	94.53
Bra013825.1-P	Field mustard	plastid	72.75	71.51
AT4G24690.1	Thale cress	cytosol, nucleus, plastid	70.14	68.75
Bra010484.1-P	Field mustard	plastid	65.8	66.57
PGSC0003DMT400019556	Potato	extracellular	7.97	56.12
Solyc06g071770.2.1	Tomato	nucleus	37.97	35.55
PGSC0003DMT400069639	Potato	nucleus	37.68	35.37
PGSC0003DMT400046670	Potato	nucleus	42.46	33.99
VIT_17s0000g09280.t01	Wine grape	nucleus	42.17	33.45
Solyc03g112230.2.1	Tomato	cytosol, nucleus, plastid	41.74	33.33
KRH57136	Soybean	nucleus	41.74	32.8
GSMUA_AchrUn_...	Banana	extracellular	6.81	31.76
GSMUA_Achr9P01840_001	Banana	nucleus	37.83	31.18
KRH03220	Soybean	nucleus	36.67	31.16
Os02t0593700-01	Rice	nucleus	38.12	31.12
TraesCS6B01G236800.1	Wheat	cytosol	36.96	29.41
Zm00001d040272_P001	Maize	plastid	5.07	29.17
TraesCS6A01G208300.2	Wheat	nucleus	36.67	29.08
HORVU6Hr1G053250.1	Barley	cytosol	36.09	28.99
Zm00001d017072_P002	Maize	nucleus	35.07	28.74
EES07083	Sorghum	nucleus	35.07	28.5
TraesCS6D01G191900.3	Wheat	nucleus	34.49	27.2
TraesCS2D01G335900.1	Wheat	mitochondrion, nucleus, plastid	33.33	26.9
TraesCS2B01G355000.6	Wheat	cytosol, nucleus, plastid	33.04	26.7
TraesCS2A01G327000.1	Wheat	cytosol, nucleus, plastid	33.04	26.64
Os04t0476800-01	Rice	nucleus	32.75	25.65
Zm00001d003300_P001	Maize	nucleus	27.39	25.3
HORVU2Hr1G082590.15	Barley	nucleus	32.9	25.03
KXG26554	Sorghum	nucleus	31.88	24.58

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.3.4.2	Gene3D:2.60.40.10	Gene3D:3.10.20.90	Gene3D:3.30.60.90	EnsemblPlantsGene:Bra019212
EnsemblPlants:Bra019212.1	EnsemblPlants:Bra019212.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016236	GO:GO:0043130
InterPro:IPR000270	InterPro:IPR000433	InterPro:IPR013783	InterPro:IPR015940	InterPro:Ig-like_fold	UniProt:M4DRR9
InterPro:NBR1	InterPro:N_BRCA1_central	InterPro:PB1_dom	PFAM:PF00564	PFAM:PF00569	PFAM:PF16158
PFscan:PS50030	PFscan:PS50135	PFscan:PS51745	PANTHER:PTHR20930	PANTHER:PTHR20930:SF2	SMART:SM00291
SMART:SM00666	SUPFAM:SSF46934	SUPFAM:SSF54277	SUPFAM:SSF57850	InterPro:UBA	InterPro:UBA-like_sf
UniParc:UPI0002541041	InterPro:Znf_ZZ	SEG:seg	:	:	:

Description

AT4G24690 (E=3e-273) | ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein

Coordinates

chrA03:+:25673613..25676441

Molecular Weight (calculated)

74868.8 Da

IEP (calculated)

4.750

GRAVY (calculated)

-0.259

Length

690 amino acids

Sequence
(BLAST)

001: MDSTSPLVVK VSYGGVLRRF RVPVKANGEL DLDMASLRGK IAALFNLPVD DGFSLTYSDE DGDVVALVDD NDLFDVTSQR LKFLKINVQL NTGVTTNSIA
101: TERSGRSSSA SGMPDIQNPV AIIQKGINDV MMAVPNPMRD TISKVYIDLT SKAASSSPVV GELFDCISKL GKLSISQEGT PCSPVTKPCS SVPSAGEKKD
201: ISKKSQTGKK PAIFGHVPTS MGVGASFNEC PFSGGIVNGS RLNPMNLNKY PLGVCHSKEG SNGDYWTSSL GVFHKGIQCD GCEVVPIMGP RFKSKVKEDY
301: DLCNNCFSVM GNEWDYTRMD EPVSARHLHP FGGLRAPFSN PWLGPALPPH HGVSDFRSTW TKLDSRFVLD VNVIDGTVVA PSAPFTKIWK MRNNGSLVWP
401: RGTQIFWIGG DRFSNSFAVD LQIPAEGVPI NGELDVKVDF VAPELPGRYI SYWMMASPIG VKFGQRVWVS INVDASLKGT GANEFHGLNL NAFPDETFAR
501: EFTGTNVNYE PAQTGSSSVN GTLKGADLER EAAGPQIPGN DDLLVGDVEP VAPNTLTPSS SSSSSSCKIV GFRNMRTVEA LGGGYSFTMD TPAPLQEDIE
601: KNDLETTMLK ELEEMGFKEI DLNKEILRDN EYNLEQSVEA LCGVSEWDPI LEELQEMGFC DDVTNKRLLK KNNGSVKGVV MDLLTGDKEA

Best Arabidopsis Sequence Match ( AT4G24690.1 )
(BLAST)

001: MESTANALVV KVSYGGVLRR FRVPVKANGQ LDLEMAGLKE KIAALFNLSA DAELSLTYSD EDGDVVALVD DNDLFDVTNQ RLKFLKINVN AGVSTNSAAP
101: ESSGSSTPAG MPNPVSKIQK GINDVLMAVP NPMRDTISKV YMDLASKAST SSPVVGEMLD CISKLGQLSI PQESSPCSPV TKPGSSGASL SRDVPSAGGK
201: KDISERTQTG RKPVNLNEPT GAHSKTSGHV PNSSGLGANF NECPFSGSTM NYSCPNPVNL NKHPRRVCHS KKSTNGDYWT SLGVFHKGIR CDGCGVLPIT
301: GPRFKSKVKE DYDLCTICYS VMGNEGDYTR MDKPVSVQHL HPFRGPFTQF PNPWLSHPVP RATNGGAPLR CTRPKLDSRF VLDVNVIDGT VVAPSAPFTK
401: IWKMRNSGSL VWPQGTQIVW IGGDRFCNSL SVDLQIPKEG VPIYSELDVK VDFVAPELPG RYISYWRMAT SDGAKFGQRV WVLIHVDASL KNSVVNEFHG
501: LNLNASPSLD ENFPSEFLGI MNYESAQPGS SSVNPGTVKG TDLEGEVGET QAVEKENLLV GEAHPAIPHG HSPSSSSSSF NMVDFPSMPA VEVLSGGSSS
601: TTKDVPVPLQ EDIEKNDVEI TMLKELEEMG FKEIDLNKEI LRDNEYNLEQ SVDALCGVSE WDPILEELQE MGFCDDVTNK RLLKKNNGSI KGVVMDLLTG
701: EKEA

Arabidopsis Description

NBR1Protein NBR1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9SB64]
SUBAcon: [cytosol,nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.