Factsheet for GSMUA_AchrUn_randomP17010_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
nucleus 1
extracellular 5
plasma membrane 3
golgi 2
endoplasmic reticulum 2
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P26260_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24690.1	GSMUA_Achr3P26260_001	AT4G29820.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400019556	Potato	extracellular	5.41	8.16
GSMUA_Achr9P01840_001	Banana	nucleus	43.92	7.77
Zm00001d003300_P001	Maize	nucleus	37.84	7.5
Os02t0593700-01	Rice	nucleus	41.89	7.34
Solyc06g071770.2.1	Tomato	nucleus	36.49	7.33
CDY08946	Canola	plastid	31.08	7.09
PGSC0003DMT400069639	Potato	nucleus	35.14	7.07
EES07083	Sorghum	nucleus	39.86	6.95
CDY11029	Canola	plastid	31.76	6.94
Zm00001d017072_P002	Maize	nucleus	39.19	6.89
HORVU6Hr1G053250.1	Barley	cytosol	39.86	6.87
CDY24845	Canola	plastid	31.08	6.81
Bra019212.1-P	Field mustard	plastid	31.76	6.81
TraesCS6B01G236800.1	Wheat	cytosol	39.86	6.81
TraesCS6A01G208300.2	Wheat	nucleus	39.86	6.78
Bra010484.1-P	Field mustard	plastid	31.08	6.74
TraesCS6D01G191900.3	Wheat	nucleus	39.86	6.74
TraesCS2B01G355000.6	Wheat	cytosol, nucleus, plastid	38.51	6.67
TraesCS2D01G335900.1	Wheat	mitochondrion, nucleus, plastid	38.51	6.67
TraesCS2A01G327000.1	Wheat	cytosol, nucleus, plastid	38.51	6.66
CDX92649	Canola	cytosol	31.08	6.66
PGSC0003DMT400046670	Potato	nucleus	38.51	6.61
AT4G24690.1	Thale cress	cytosol, nucleus, plastid	31.08	6.53
HORVU2Hr1G082590.15	Barley	nucleus	39.86	6.5
CDY34302	Canola	plastid	30.41	6.41
Bra013825.1-P	Field mustard	plastid	30.41	6.41
CDY03427	Canola	cytosol	30.41	6.38
Solyc03g112230.2.1	Tomato	cytosol, nucleus, plastid	37.16	6.37
Os04t0476800-01	Rice	nucleus	37.84	6.36
KXG26554	Sorghum	nucleus	37.84	6.26
KRH57136	Soybean	nucleus	35.81	6.04
KRH03220	Soybean	nucleus	33.11	6.03
VIT_17s0000g09280.t01	Wine grape	nucleus	33.78	5.75
Zm00001d040272_P001	Maize	plastid	3.38	4.17

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP17010_001	EnsemblPlants:GSMUA_AchrUn_randomT17010_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG17010_001	Gene3D:2.60.40.10	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:N_BRCA1_central	PANTHER:PTHR20930	PANTHER:PTHR20930:SF3
PFAM:PF16158	SEG:seg	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002966AB4	UniProt:M0U9W0
MapMan:19.3.4.2	:	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG17010_001]

Coordinates

chrchrUn_random:-:80791901..80792761

Molecular Weight (calculated)

17224.2 Da

IEP (calculated)

8.758

GRAVY (calculated)

0.249

Length

148 amino acids

Sequence
(BLAST)

001: MCNAIHTFNC LIMLFTTSDL LTSFTWFWCE AIKTKIRKLL YQNITVLDGT LMPPSTRFTK IWRMQNNGTT RWPYRTKLVW AGGDKFANKD YFDVAVDLTS
101: PAVPCLVGIF HIGDWRHLLV KCLDNEFGFI LRWISLNQTL LLEVSILI

Best Arabidopsis Sequence Match ( AT4G24690.1 )
(BLAST)

001: MESTANALVV KVSYGGVLRR FRVPVKANGQ LDLEMAGLKE KIAALFNLSA DAELSLTYSD EDGDVVALVD DNDLFDVTNQ RLKFLKINVN AGVSTNSAAP
101: ESSGSSTPAG MPNPVSKIQK GINDVLMAVP NPMRDTISKV YMDLASKAST SSPVVGEMLD CISKLGQLSI PQESSPCSPV TKPGSSGASL SRDVPSAGGK
201: KDISERTQTG RKPVNLNEPT GAHSKTSGHV PNSSGLGANF NECPFSGSTM NYSCPNPVNL NKHPRRVCHS KKSTNGDYWT SLGVFHKGIR CDGCGVLPIT
301: GPRFKSKVKE DYDLCTICYS VMGNEGDYTR MDKPVSVQHL HPFRGPFTQF PNPWLSHPVP RATNGGAPLR CTRPKLDSRF VLDVNVIDGT VVAPSAPFTK
401: IWKMRNSGSL VWPQGTQIVW IGGDRFCNSL SVDLQIPKEG VPIYSELDVK VDFVAPELPG RYISYWRMAT SDGAKFGQRV WVLIHVDASL KNSVVNEFHG
501: LNLNASPSLD ENFPSEFLGI MNYESAQPGS SSVNPGTVKG TDLEGEVGET QAVEKENLLV GEAHPAIPHG HSPSSSSSSF NMVDFPSMPA VEVLSGGSSS
601: TTKDVPVPLQ EDIEKNDVEI TMLKELEEMG FKEIDLNKEI LRDNEYNLEQ SVDALCGVSE WDPILEELQE MGFCDDVTNK RLLKKNNGSI KGVVMDLLTG
701: EKEA

Arabidopsis Description

NBR1Protein NBR1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9SB64]
SUBAcon: [cytosol,nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.