CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, peroxisome, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68589
CDX85073
CDX88086
CDX88087
CDY43528

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24690.1	CDX68589	AT4G29820.1	21798944
AT4G24690.1	CDX85073	AT4G29820.1	21798944
AT4G24690.1	CDX88086	AT4G29820.1	21798944
AT4G24690.1	CDX88087	AT4G29820.1	21798944
AT4G24690.1	CDY43528	AT4G29820.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010484.1-P	Field mustard	plastid	93.33	92.38
CDY08946	Canola	plastid	78.81	81.97
AT4G24690.1	Thale cress	cytosol, nucleus, plastid	75.26	72.16
CDY03427	Canola	cytosol	74.96	71.77
CDY34302	Canola	plastid	73.63	70.8
CDX92649	Canola	cytosol	66.22	64.69
CDY11029	Canola	plastid	64.44	64.25
PGSC0003DMT400019556	Potato	extracellular	8.89	61.22
Solyc06g071770.2.1	Tomato	nucleus	39.26	35.96
PGSC0003DMT400069639	Potato	nucleus	38.96	35.78
PGSC0003DMT400046670	Potato	nucleus	44.59	34.92
Solyc03g112230.2.1	Tomato	cytosol, nucleus, plastid	43.7	34.14
KRH57136	Soybean	nucleus	44.3	34.05
KRH03220	Soybean	nucleus	40.15	33.37
VIT_17s0000g09280.t01	Wine grape	nucleus	42.07	32.64
GSMUA_AchrUn_...	Banana	extracellular	6.81	31.08
GSMUA_Achr9P01840_001	Banana	nucleus	38.07	30.7
Os02t0593700-01	Rice	nucleus	37.93	30.3
HORVU6Hr1G053250.1	Barley	cytosol	36.59	28.75
EES07083	Sorghum	nucleus	36.0	28.62
TraesCS6B01G236800.1	Wheat	cytosol	36.74	28.6
Zm00001d017072_P002	Maize	nucleus	35.56	28.5
TraesCS6A01G208300.2	Wheat	nucleus	36.59	28.39
Zm00001d040272_P001	Maize	plastid	4.89	27.5
TraesCS6D01G191900.3	Wheat	nucleus	34.37	26.51
Zm00001d003300_P001	Maize	nucleus	28.74	25.97
TraesCS2B01G355000.6	Wheat	cytosol, nucleus, plastid	32.74	25.88
TraesCS2D01G335900.1	Wheat	mitochondrion, nucleus, plastid	32.59	25.73
TraesCS2A01G327000.1	Wheat	cytosol, nucleus, plastid	32.3	25.47
Os04t0476800-01	Rice	nucleus	32.3	24.74
HORVU2Hr1G082590.15	Barley	nucleus	32.59	24.26
KXG26554	Sorghum	nucleus	31.85	24.02

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.3.4.2	Gene3D:2.60.40.10	Gene3D:3.10.20.90	Gene3D:3.30.60.90	GO:A0A078GE91
UniProt:A0A078GE91	EnsemblPlants:CDY24845	ProteinID:CDY24845	ProteinID:CDY24845.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987
GO:GO:0016236	GO:GO:0043130	EnsemblPlantsGene:GSBRNA2T00027326001	InterPro:IPR000270	InterPro:IPR000433	InterPro:IPR013783
InterPro:Ig-like_fold	InterPro:NBR1	InterPro:N_BRCA1_central	InterPro:PB1_dom	PFAM:PF00564	PFAM:PF00569
PFAM:PF16158	PFscan:PS50135	PANTHER:PTHR20930	PANTHER:PTHR20930:SF2	SMART:SM00291	SMART:SM00666
SUPFAM:SSF46934	SUPFAM:SSF54277	SUPFAM:SSF57850	InterPro:UBA-like_sf	UniParc:UPI0004EDB018	InterPro:Znf_ZZ
SEG:seg	:	:	:	:	:

Description

BnaA08g14650DBnaA08g14650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GE91]

Coordinates

chrLK032164:+:535437..538490

Molecular Weight (calculated)

73418.5 Da

IEP (calculated)

4.934

GRAVY (calculated)

-0.349

Length

675 amino acids

Sequence
(BLAST)

001: MDSATSLVVK VSYGGVLRRF RVSVNANGQL DLDMAVLRWK IIRLFNFPVD ADFSLTYSDE DGDVVALVDN NDLFDVTNQR LKFLKIHVQS NNNSVAPEGT
101: RSSTASAMPN SINPVSQIQK GINDETISSS PVVGELFDCI SKLGTLSGPQ EGSLLSPVAI PVLSGPYPSR EVPSFGEKKN ISEKSQTGKK PVDLNEPTGF
201: AVSKTSGPVP TSSGLDASFN ECPFSGSTVN RSSPNPVNFK KHARRVCHNK KSSNGDYWTS LGVFHKGIRC DGCGVLPITG SRFKSKVKED YDLCTICFSV
301: MGNEGDYTRM DKPASVQHSH PFRGQLTPIS NPWVGHVPQP QHGGLHLRCT RPKLDSRFVL DVNVLDGTVF APSAQFTKIW KMRNNGSLVW PHGTQIVWIG
401: GDRLSNSLSV DLQIPAEGAP IDSELDVKVD FVAPELPGRY ISYWRMASSS GAKFGQRVWV LIHVDASLEN FVVNKFHGLN LNASPDENSS SEFTGINHKP
501: TQAGSSSVNS EVVKGADLEG EAAGSKVPEK DDLPVGEAEP ATLSPSSSSS SFNMIEFPNM PAVEALGGGS SSTKDIPVDL QEDIEKNDVE ITMLKELEEM
601: GFKEIDLNKE ILRENEYDLE QSVDALCGVS EWDPILEELQ EMGFCDDVTN KKLLKKNNGS IKGVVMDLLT GEKEA

Best Arabidopsis Sequence Match ( AT4G24690.1 )
(BLAST)

001: MESTANALVV KVSYGGVLRR FRVPVKANGQ LDLEMAGLKE KIAALFNLSA DAELSLTYSD EDGDVVALVD DNDLFDVTNQ RLKFLKINVN AGVSTNSAAP
101: ESSGSSTPAG MPNPVSKIQK GINDVLMAVP NPMRDTISKV YMDLASKAST SSPVVGEMLD CISKLGQLSI PQESSPCSPV TKPGSSGASL SRDVPSAGGK
201: KDISERTQTG RKPVNLNEPT GAHSKTSGHV PNSSGLGANF NECPFSGSTM NYSCPNPVNL NKHPRRVCHS KKSTNGDYWT SLGVFHKGIR CDGCGVLPIT
301: GPRFKSKVKE DYDLCTICYS VMGNEGDYTR MDKPVSVQHL HPFRGPFTQF PNPWLSHPVP RATNGGAPLR CTRPKLDSRF VLDVNVIDGT VVAPSAPFTK
401: IWKMRNSGSL VWPQGTQIVW IGGDRFCNSL SVDLQIPKEG VPIYSELDVK VDFVAPELPG RYISYWRMAT SDGAKFGQRV WVLIHVDASL KNSVVNEFHG
501: LNLNASPSLD ENFPSEFLGI MNYESAQPGS SSVNPGTVKG TDLEGEVGET QAVEKENLLV GEAHPAIPHG HSPSSSSSSF NMVDFPSMPA VEVLSGGSSS
601: TTKDVPVPLQ EDIEKNDVEI TMLKELEEMG FKEIDLNKEI LRDNEYNLEQ SVDALCGVSE WDPILEELQE MGFCDDVTNK RLLKKNNGSI KGVVMDLLTG
701: EKEA

Arabidopsis Description

NBR1Protein NBR1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9SB64]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.