Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, peroxisome, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
- peroxisome 1
- nucleus 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009744.1-P | Field mustard | cytosol, mitochondrion, peroxisome | 100.0 | 100.0 |
| CDY43528 | Canola | cytosol | 67.35 | 15.21 |
| CDX85073 | Canola | cytosol, extracellular, nucleus | 65.31 | 15.02 |
| AT4G29820.1 | Thale cress | cytosol | 65.31 | 14.41 |
| PGSC0003DMT400046377 | Potato | cytosol | 57.14 | 13.86 |
| KRH37445 | Soybean | nucleus | 59.18 | 12.89 |
| Solyc07g041000.2.1 | Tomato | cytosol | 53.06 | 12.87 |
| CDX89414 | Canola | cytosol | 51.02 | 12.5 |
| CDX92717 | Canola | cytosol | 51.02 | 12.5 |
| CDY50198 | Canola | cytosol | 51.02 | 12.5 |
| CDY52363 | Canola | cytosol | 51.02 | 12.5 |
| CDY54086 | Canola | cytosol | 51.02 | 12.5 |
| CDX68589 | Canola | plastid | 67.35 | 11.62 |
| CDX94441 | Canola | cytosol | 51.02 | 10.59 |
| GSMUA_Achr3P26260_001 | Banana | cytosol | 44.9 | 10.23 |
| VIT_11s0016g01760.t01 | Wine grape | plastid | 57.14 | 9.62 |
| KRH12461 | Soybean | plastid | 55.1 | 9.12 |
| TraesCS7D01G325500.1 | Wheat | cytosol | 38.78 | 8.96 |
| Os08t0398800-02 | Rice | cytosol | 40.82 | 8.85 |
| TraesCS7A01G328600.1 | Wheat | cytosol, nucleus, peroxisome | 36.73 | 8.49 |
| Zm00001d050266_P001 | Maize | cytosol | 36.73 | 8.04 |
| OQU80396 | Sorghum | cytosol | 38.78 | 7.98 |
| HORVU7Hr1G078670.4 | Barley | plastid | 38.78 | 7.36 |
| TraesCS7B01G229300.1 | Wheat | cytosol | 36.73 | 7.35 |
| CDX88087 | Canola | cytosol, extracellular, mitochondrion, plastid | 0.0 | 0.0 |
Protein Annotations
| MapMan:16.2.1.4.1 | Gene3D:3.90.79.10 | GO:A0A078DFR3 | EnsemblPlants:CDX88086 | ProteinID:CDX88086 | ProteinID:CDX88086.1 |
| InterPro:Cleav_polyA_spec_factor_su5 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005849 |
| GO:GO:0006139 | GO:GO:0006378 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00147513001 |
| PFAM:PF13869 | PANTHER:PTHR13047 | PANTHER:PTHR13047:SF1 | UniParc:UPI000253F172 | : | : |
Description
BnaA06g26770D
Coordinates
chrLK031854:-:522949..523200
Molecular Weight (calculated)
5650.0 Da
IEP (calculated)
9.467
GRAVY (calculated)
-0.276
Length
49 amino acids
Sequence
(BLAST)
(BLAST)
1: MKVGECIGTW WRPNFKTLMY PFLPPNVKHP KECLKLSWET SAPSAVCRA
001: MGEEARALDM EEISDNTTRR NDVVHDLMVD LYPLSSYYFG SKEALRVKDE IISDRVIRLK SNYAAHGLRT CVEAVLLVEL FKHPHVLLLQ YRNSIFKLPG
101: GRLRPGESDI EGLKRKLASK LSVNENVGVS GYEVGECIGM WWRPNFETLM YPFLPPNIKH PKECTKLFLV RLPVHQQFVV PKNFKLLAVP LCQLHENEKT
201: YGPIMSQIPK LLSKFSFNMM EI
101: GRLRPGESDI EGLKRKLASK LSVNENVGVS GYEVGECIGM WWRPNFETLM YPFLPPNIKH PKECTKLFLV RLPVHQQFVV PKNFKLLAVP LCQLHENEKT
201: YGPIMSQIPK LLSKFSFNMM EI
Arabidopsis Description
CFIS1Pre-mRNA cleavage factor Im 25 kDa subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94AF0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.