CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77591
CDX88655
CDX98205
CDY11833
CDY12057
CDY43886
CDY70580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25550.1	CDX77591	AT1G30460.1	18479511
AT4G25550.1	CDX98205	AT1G30460.1	18479511
AT4G25550.1	CDY12057	AT1G30460.1	18479511
AT4G25550.1	CDX88655	AT5G58040.1	18479511
AT4G25550.1	CDY11833	AT5G58040.1	18479511
AT4G25550.1	CDY43886	AT5G58040.1	18479511
AT4G25550.1	CDY70580	AT5G58040.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013899.1-P	Field mustard	cytosol	100.0	100.0
CDY52363	Canola	cytosol	98.5	98.5
CDY54086	Canola	cytosol	98.5	98.5
CDX92717	Canola	cytosol	97.0	97.0
CDY50198	Canola	cytosol	96.5	96.5
AT4G25550.1	Thale cress	cytosol	96.0	96.0
KRH35335	Soybean	cytosol	32.5	89.04
PGSC0003DMT400037077	Potato	cytosol	27.5	88.71
PGSC0003DMT400084196	Potato	peroxisome	29.5	88.06
KRG91493	Soybean	endoplasmic reticulum, nucleus	87.5	87.5
VIT_16s0050g00030.t01	Wine grape	cytosol, plastid	85.0	85.0
Solyc03g025880.2.1	Tomato	nucleus	85.0	85.0
Solyc01g009630.2.1	Tomato	nucleus	85.0	85.0
Solyc01g009620.2.1	Tomato	nucleus	84.0	84.0
CDX94441	Canola	cytosol	99.0	83.9
HORVU2Hr1G124110.1	Barley	cytosol	84.5	83.25
TraesCS2D01G592500.2	Wheat	cytosol	84.5	83.25
TraesCS2B01G608100.1	Wheat	cytosol	84.5	83.25
TraesCS2A01G580600.1	Wheat	nucleus	84.5	83.25
TraesCS1B01G366600.1	Wheat	cytosol	83.5	82.27
TraesCS1D01G355400.1	Wheat	cytosol	83.0	81.77
TraesCS1A01G355100.1	Wheat	cytosol	83.0	81.77
PGSC0003DMT400037076	Potato	cytosol, plastid	46.0	80.7
HORVU1Hr1G081030.2	Barley	cytosol	41.0	77.36
CDX88086	Canola	cytosol, mitochondrion, peroxisome	12.5	51.02
GSMUA_AchrUn_...	Banana	plastid	22.5	50.56
HORVU0Hr1G001450.1	Barley	plastid	44.5	49.17
CDY43528	Canola	cytosol	52.5	48.39
CDX88087	Canola	cytosol, extracellular, mitochondrion, plastid	12.0	43.64
CDX68589	Canola	plastid	53.0	37.32
CDX85073	Canola	cytosol, extracellular, nucleus	36.0	33.8

Protein Annotations

MapMan:16.2.1.4.1	Gene3D:3.90.79.10	GO:A0A078DLC6	EnsemblPlants:CDX89414	ProteinID:CDX89414	ProteinID:CDX89414.1
InterPro:Cleav_polyA_spec_factor_su5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005849	GO:GO:0006139	GO:GO:0006378	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00149654001	InterPro:NUDIX_hydrolase-like_dom_sf	PFAM:PF13869	PIRSF:PIRSF017888	PANTHER:PTHR13047
SUPFAM:SSF55811	UniParc:UPI0002546A02	:	:	:	:

Description

BnaA01g14790D

Coordinates

chrLK031858:-:1470246..1472998

Molecular Weight (calculated)

22886.0 Da

IEP (calculated)

9.630

GRAVY (calculated)

-0.331

Length

200 amino acids

Sequence
(BLAST)

001: MAMSQIVNTY PLSNYSFGTK EPKLEKDTSV ADRLARMKIN YMKEGMRTSV DAILLVQEHN HPHILLLQIG NTFCKLPGGR LKPGENEVEG LKRKLTSKLG
101: GNSAGLVPDW KVGECVATWW RPNFETMMYP YCPPHITKPK ECKRLYVVHL SEKEYFAVPK NLKLLAVPLF ELYDNVQRYG PVISTIPQQL SRFHFNMISS

Best Arabidopsis Sequence Match ( AT4G25550.1 )
(BLAST)

001: MAMSQVVNTY PLSNYSFGTK EPKLEKDTSV ADRLARMKIN YMKEGMRTSV EGILLVQEHN HPHILLLQIG NTFCKLPGGR LKPGENEADG LKRKLTSKLG
101: GNSAALVPDW TVGECVATWW RPNFETMMYP YCPPHITKPK ECKRLYIVHL SEKEYFAVPK NLKLLAVPLF ELYDNVQRYG PVISTIPQQL SRFHFNMISS

Arabidopsis Description

CFIS2Pre-mRNA cleavage factor Im 25 kDa subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.