CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77591
CDX80392
CDX83892
CDX88053
CDX88655
CDX89414
CDX91600
CDX92717
CDX94441
CDX94585
CDX96143
CDX96753
CDX98205
CDY02182
CDY05277
CDY09421
CDY11833
CDY12057
CDY16640
CDY24682
CDY36205
CDY43886
CDY46934
CDY50198
CDY52363
CDY54086
CDY58694
CDY66642
CDY70580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30460.1	CDX83892	AT1G17760.1	18479511
AT1G30460.1	CDX96753	AT1G17760.1	18479511
AT1G30460.1	CDX77591	AT1G30460.1	18479511
AT1G30460.1	CDX98205	AT1G30460.1	18479511
AT1G30460.1	CDY12057	AT1G30460.1	18479511
AT1G30460.1	CDX96143	AT1G66500.1	18479511
AT1G30460.1	CDY36205	AT1G66500.1	18479511
AT1G30460.1	CDY09421	AT2G01730.1	16897494
AT1G30460.1	CDY66642	AT2G01730.1	16897494
AT1G30460.1	CDY05277	AT3G06560.1	16897494
AT1G30460.1	CDY24682	AT3G06560.1	16897494
AT1G30460.1	CDY05277	AT3G06560.1	18479511
AT1G30460.1	CDY24682	AT3G06560.1	18479511
AT1G30460.1	CDX94585	AT4G04885.1	18479511
AT1G30460.1	CDY16640	AT4G04885.1	18479511
AT1G30460.1	CDX89414	AT4G25550.1	18479511
AT1G30460.1	CDX92717	AT4G25550.1	18479511
AT1G30460.1	CDX94441	AT4G25550.1	18479511
AT1G30460.1	CDY50198	AT4G25550.1	18479511
AT1G30460.1	CDY52363	AT4G25550.1	18479511
AT1G30460.1	CDY54086	AT4G25550.1	18479511
AT1G30460.1	CDX80392	AT5G23880.1	16897494
AT1G30460.1	CDX88053	AT5G23880.1	16897494
AT1G30460.1	CDX80392	AT5G23880.1	18479511
AT1G30460.1	CDX88053	AT5G23880.1	18479511
AT1G30460.1	CDX91600	AT5G51660.1	16897494
AT1G30460.1	CDY46934	AT5G51660.1	16897494
AT1G30460.1	CDX91600	AT5G51660.1	18479511
AT1G30460.1	CDY46934	AT5G51660.1	18479511
AT1G30460.1	CDX88655	AT5G58040.1	16282318
AT1G30460.1	CDY11833	AT5G58040.1	16282318
AT1G30460.1	CDY43886	AT5G58040.1	16282318
AT1G30460.1	CDY70580	AT5G58040.1	16282318
AT1G30460.1	CDX88655	AT5G58040.1	18479511
AT1G30460.1	CDY11833	AT5G58040.1	18479511
AT1G30460.1	CDY43886	AT5G58040.1	18479511
AT1G30460.1	CDY70580	AT5G58040.1	18479511
AT1G30460.1	CDY02182	AT5G60940.1	18479511
AT1G30460.1	CDY58694	AT5G60940.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52193	Canola	nucleus	25.3	92.22
Bra010767.1-P	Field mustard	nucleus	79.88	83.17
CDX98205	Canola	nucleus	64.63	77.94
AT1G30460.1	Thale cress	nucleus	74.24	77.18
CDX77591	Canola	nucleus	69.21	76.3
CDX90251	Canola	nucleus	26.07	75.66
KRH36762	Soybean	nucleus	57.01	54.92
KRH11760	Soybean	nucleus	57.47	54.56
VIT_10s0003g04600.t01	Wine grape	nucleus	55.95	54.53
Solyc02g070240.2.1	Tomato	nucleus	55.64	54.4
GSMUA_Achr9P30440_001	Banana	nucleus	54.27	54.19
Solyc02g021760.2.1	Tomato	nucleus	55.64	52.98
Zm00001d014378_P001	Maize	cytosol, nucleus, peroxisome	51.52	52.81
EER88812	Sorghum	cytosol, nucleus, peroxisome	51.52	52.4
GSMUA_Achr6P19820_001	Banana	nucleus	55.03	52.17
Zm00001d036594_P001	Maize	cytosol, nucleus, peroxisome	50.76	51.47
HORVU7Hr1G106340.5	Barley	cytosol	50.46	51.0
TraesCS7D01G450100.1	Wheat	nucleus	50.46	50.92
TraesCS7A01G461800.1	Wheat	nucleus	50.3	50.77
TraesCS7B01G363200.2	Wheat	nucleus	50.3	50.54
Os06t0677700-00	Rice	cytosol, nucleus, plasma membrane	52.13	49.85
Zm00001d014379_P001	Maize	nucleus	17.07	45.53
Zm00001d036595_P001	Maize	nucleus	16.92	44.22
CDY47426	Canola	nucleus	15.24	28.41
CDY04384	Canola	nucleus	14.79	28.03

Protein Annotations

MapMan:16.2.1.2.5	Gene3D:3.10.590.10	Gene3D:4.10.1000.10	GO:A0A078FGG7	UniProt:A0A078FGG7	EnsemblPlants:CDY12057
ProteinID:CDY12057	ProteinID:CDY12057.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00061011001	InterPro:IPR000571	InterPro:IPR007275	PFAM:PF04146	PFscan:PS50103
PFscan:PS50882	PANTHER:PTHR12357	PANTHER:PTHR12357:SF59	SMART:SM00356	SUPFAM:SSF90229	UniParc:UPI0004EEFA4E
InterPro:YTH_domain	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg	:	:

Description

BnaC03g59730DBnaC03g59730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FGG7]

Coordinates

chrLK032017:-:159166..163484

Molecular Weight (calculated)

72978.9 Da

IEP (calculated)

6.141

GRAVY (calculated)

-0.728

Length

656 amino acids

Sequence
(BLAST)

001: MEDADGLSFD FEGGLDSGPI QPTASVPVAP LENQSSAAVN LTPSYDHSSA AAAGAGRGRS FRQTVCRHWL RGLCMKGDAC GFLHQYDKAR MPICRFFRVH
101: GECREQDCVY KHTNEDIKEC NMYKLGFCPN GPDCRYRHAK LPGPPPPVEE VLQKIQQLTS YIQTQEPGNL QQQQQQPQQS QHQVSQTQTQ TQNTADQTSH
201: PLPRGVNSVT PLDFVLLFSF LCAYESLDKL MTWPLSQFDG HKSFSCWSLR ISCLLSCSSL QYFVVKSNNS ENFELSVQQG VWATQRSNEA KLNEAFDIVD
301: NVILIFSVNR TRHFQGCAKM TSRIGGYIGG GNWKNEHGTQ QYGGNFSVKW LKLCELSFHK TRNLRNPYNE NLPVKISRDC QELEPSVGEE LASLLYLEPD
401: SKLMAISIAA EAKREEEKAK GVNPESRAEN PDIVPFEDNE EEEEEEDESE EEEDGMANGP QGRGRGRGMM WPPQMPMGRG IRPMPGMGGF PLGVMNPADI
501: NLLNLFKFIK FIKLLNPFGM GPRPFGPRFG GDFRGPVPGM MFPGRPPQQF PHGGYGMMGG SGRGGPLMGG MGNAPRGGGG RPMYYPPATT TASSARPGPT
601: SSNRRTTPER SDDRGAVDES HEMEQFELGN SLRNEETESE DEDKAPRRSR HGDKRR

Best Arabidopsis Sequence Match ( AT1G30460.1 )
(BLAST)

001: MEDADGLSFD FEGGLDSGPV QNTASVPVAP PENSSSAAVN VAPTYDHSSA TVAGAGRGRS FRQTVCRHWL RGLCMKGDAC GFLHQFDKAR MPICRFFRLY
101: GECREQDCVY KHTNEDIKEC NMYKLGFCPN GPDCRYRHAK LPGPPPPVEE VLQKIQQLTT YNYGTNRLYQ ARNVAPQLQD RPQGQVPMQG QPQESGNLQQ
201: QQQQQPQQSQ HQVSQTLIPN PADQTNRTSH PLPQGVNRYF VVKSNNRENF ELSVQQGVWA TQRSNEAKLN EAFDSVENVI LIFSVNRTRH FQGCAKMTSR
301: IGGYIGGGNW KHEHGTAQYG RNFSVKWLKL CELSFHKTRN LRNPYNENLP VKISRDCQEL EPSVGEQLAS LLYLEPDSEL MAISIAAEAK REEEKAKGVN
401: PESRAENPDI VPFEDNEEEE EEEDESEEEE ESMAGGPQGR GRGRGIMWPP QMPLGRGIRP MPGMGGFPLG VMGPGDAFPY GPGGYNGMPD PFGMGPRPFG
501: PYGPRFGGDF RGPVPGMMFP GRPPQQFPHG GYGMMGGGRG PHMGGMGNAP RGGRPMYYPP ATSSARPGPS NRKTPERSDE RGVSGDQQNQ DASHDMEQFE
601: VGNSLRNEES ESEDEDEAPR RSRHGEGKKR R

Arabidopsis Description

CPSF3030-kDa cleavage and polyadenylation specificity factor 30 [Source:UniProtKB/Swiss-Prot;Acc:A9LNK9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.