CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77591
CDX83892
CDX94585
CDX96143
CDX96753
CDX98205
CDY12057
CDY16640
CDY36205

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G66500.1	CDX83892	AT1G17760.1	18479511
AT1G66500.1	CDX96753	AT1G17760.1	18479511
AT1G66500.1	CDX77591	AT1G30460.1	18479511
AT1G66500.1	CDX98205	AT1G30460.1	18479511
AT1G66500.1	CDY12057	AT1G30460.1	18479511
AT1G66500.1	CDX94585	AT4G04885.1	18479511
AT1G66500.1	CDY16640	AT4G04885.1	18479511
AT1G66500.1	CDX96143	AT5G43620.1	18479511
AT1G66500.1	CDY36205	AT5G43620.1	18479511
AT5G43620.1	CDX83892	AT1G17760.1	18479511
AT5G43620.1	CDX96753	AT1G17760.1	18479511
AT5G43620.1	CDX96143	AT1G66500.1	18479511
AT5G43620.1	CDY36205	AT1G66500.1	18479511
AT5G43620.1	CDX94585	AT4G04885.1	18479511
AT5G43620.1	CDY16640	AT4G04885.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96143	Canola	nucleus	68.18	69.51
VIT_18s0086g00630.t01	Wine grape	cytosol	6.94	41.43
AT5G43620.1	Thale cress	nucleus	39.0	39.76
AT1G66500.1	Thale cress	nucleus	35.89	36.06
VIT_18s0086g00620.t01	Wine grape	extracellular	7.66	23.36
CDY16640	Canola	nucleus	25.12	13.57
CDX94585	Canola	nucleus	23.21	12.76
GSMUA_Achr6P18930_001	Banana	nucleus	22.97	11.68
Zm00001d000023_P004	Maize	nucleus	25.6	11.1
TraesCS7D01G290300.2	Wheat	nucleus	24.16	10.84
TraesCS7A01G294500.5	Wheat	nucleus	24.16	10.83
HORVU7Hr1G069840.2	Barley	plastid	25.36	10.79
Zm00001d049442_P009	Maize	nucleus	24.88	10.75
Os08t0187700-01	Rice	cytosol	24.64	10.61
OQU80002	Sorghum	nucleus	23.68	10.37
CDY69913	Canola	nucleus	17.46	10.18
TraesCS7B01G181900.3	Wheat	nucleus	23.68	9.92
CDY33156	Canola	nucleus	19.14	9.71
CDX75035	Canola	nucleus	19.62	8.09
CDY33157	Canola	nucleus	1.91	4.71

Protein Annotations

EnsemblPlants:CDY36205	EnsemblPlantsGene:GSBRNA2T00060115001	GO:A0A078HCR7	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_type	ncoils:Coil	PANTHER:PTHR15921	ProteinID:CDY36205	ProteinID:CDY36205.1
ScanProsite:PS00028	SEG:seg	UniParc:UPI0004EDB188	UniProt:A0A078HCR7	MapMan:16.2.1.5.2	:

Description

BnaC06g27490DBnaC06g27490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HCR7]

Coordinates

chrLK032370:-:18587..19843

Molecular Weight (calculated)

47091.4 Da

IEP (calculated)

8.794

GRAVY (calculated)

-0.788

Length

418 amino acids

Sequence
(BLAST)

001: MSSSNGVFAH RRNTHRDAGK MLKRPFDNPG GYVGRIGGFQ EEDRSRYAPP QKLPRYQTQP QFQSAKPNGG GIPMYRHHHH HDSNLSRVSN YGDVINSNSS
101: NVFPFALRNN ESNAHYQKPY GYRNPNPQSV PLPLPYRKLD GFDSLPEWVP NFVPNTNRDI TGVRFNANPL LSQAPVFTNS PNSIPMNHPN MVSVVSQLLP
201: QPPIVSKELA DLLSVLNNNE KEKERECDLG LDFDKIDLNV RRESVVKSLY SDMPRQCSSC GVRFKGQEEH SKHMDWHVRK NRMAKDATKA TTTTRVSQKS
301: KQSRDWFASS PLWLSAATGA AIEGAKPVFG ETQKTKEEEK QQQHIVPADE SQKMCALCLE SLEEFFSHEE DDWMYRDAAY LNMNGSGPIV HVNCMPEPRK
401: GPAKESAKLV TVASAVVC

Best Arabidopsis Sequence Match ( AT5G43620.1 )
(BLAST)

001: MASNGSFSAQ RNANAGTTMK RRNDNRGYGG GIGCYQEERN RYAPPQKRFR SQLQQQFRSG HNPLYHYGSN TNNNVSRVSS QSYNNYGVDV IASNSSFALP
101: NNDSNTNNYQ KPFVVYGNPN PQIVPLPLPY RKLDPLDSLP QWVPNSTPNY PVRSSNFVPN TPDFTNVQNP MNHSNMVSVV SQSMHQPIVL SKELTDLLSL
201: LNNEKEKKTS EASNNDSLPV GLSFDNPSSL NVRHESVIKS LYSDMPRQCT SCGVRFKCQE EHSKHMDWHV RKNRSVKTTT RLGQQPKKSR GWLASASLWL
301: CAPTGGGTVE VASFGGGEMQ KKNEKDQVQK QHMVPADEDQ KNCALCVEPF EEFFSHEADD WMYKDAVYLT KNGRIVHVKC MPEPRPAKDL REPSRVMSVT
401: VPSVAKAILC

Arabidopsis Description

PCFS5Polyadenylation and cleavage factor homolog 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.