Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96753 | Canola | nucleus | 95.72 | 98.62 |
| AT1G17760.1 | Thale cress | nucleus | 85.03 | 86.65 |
| KRG94131 | Soybean | cytosol, nucleus | 66.84 | 67.66 |
| Solyc10g050540.1.1 | Tomato | nucleus | 62.83 | 63.43 |
| GSMUA_Achr9P17150_001 | Banana | plastid | 63.1 | 59.9 |
| Os12t0571900-01 | Rice | cytosol | 58.42 | 59.78 |
| TraesCS3A01G074000.1 | Wheat | nucleus | 57.35 | 59.17 |
| TraesCS3D01G073700.1 | Wheat | nucleus | 57.35 | 59.17 |
| Zm00001d038093_P007 | Maize | nucleus | 58.02 | 58.1 |
| KXG22737 | Sorghum | cytosol | 58.02 | 57.87 |
| TraesCS3B01G088300.3 | Wheat | nucleus | 57.35 | 57.82 |
| VIT_11s0065g00710.t01 | Wine grape | cytosol | 67.51 | 55.8 |
| HORVU3Hr1G013370.4 | Barley | plastid | 57.22 | 54.38 |
Protein Annotations
| Gene3D:1.25.40.1040 | MapMan:16.2.1.3.1 | GO:A0A078D425 | EnsemblPlants:CDX83892 | ProteinID:CDX83892 | ProteinID:CDX83892.1 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00139666001 | InterPro:HAT | InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR019734 |
| PFAM:PF05843 | PFAM:PF13428 | PFscan:PS50005 | PFscan:PS50293 | PANTHER:PTHR19980 | SMART:SM00386 |
| SUPFAM:SSF48452 | InterPro:Suf | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_repeat | UniParc:UPI0004EF1D7E |
| SEG:seg | : | : | : | : | : |
Description
BnaC08g17530D
Coordinates
chrLK031834:+:1007942..1013715
Molecular Weight (calculated)
84723.2 Da
IEP (calculated)
8.031
GRAVY (calculated)
-0.512
Length
748 amino acids
Sequence
(BLAST)
(BLAST)
001: MADKYNVEEA EALAKRALHL PITQATPIYE QLLSLYPTSA RFWKQYVETQ MAVNNDDATK QIFSRCLLTC LQVPLWQCYI RFIRKVYDKK GAEGQEETTK
101: AFEFTLNYIG TDIASGPIWT EYITFLKSLP ALNPHEDMQR KIALRKVYQR AILTPTHHVE QLWKEYENFE NSVNRQLAKG LVNDYQPKFN SARAVYRERK
201: KYIEDIDWNM LAVPPTGSSK EEVQWVAWKK FLTFEKGNPQ RIDTALSTKR IIYVYEQCLM CLYHYPDVWY DYAEWHIKSG STDAAIKVFQ RALKAIPDSE
301: MLKYAYAELE EARGAIQSAK NLYESILGVS TNSLAQIQFL RFLRRAEGVE SARKYFLEAR KSPSCTYHVY IAFATMAFCL DKDPKVCFGR SGRSVNKPGE
401: FYDNELNAAH NIFEEGLKRY MTEPVYILEY ADFLTRLNDD RNIRALFERA LSTLPTEESA EVWNRFVQFE QTYGDLASIL KVEQRRKEAL FGKGEEGSPA
501: LDSSLQDVVS RYSYMDLWPC TSNELDHLSR QELLVKNMNK KVEKTNQPHG SAIIVNKSPC GLSGSVASSS KVVYPDTAQM VVHDPAKKSG IEFSTTATHV
601: SANTFDEIPK TTPPALLAFL ANLPHVDGPT PNVDVVLSIC LQSDLPTGQT AKQSFTAKGN VPSQNDPSGP NRGGSQRLPR DRRATKRKGS DRQEDDDTAS
701: IQSQPLPTDV FRLRQMRKAR GISTSSQTPT GSASYGSAYS GELSGSTG
101: AFEFTLNYIG TDIASGPIWT EYITFLKSLP ALNPHEDMQR KIALRKVYQR AILTPTHHVE QLWKEYENFE NSVNRQLAKG LVNDYQPKFN SARAVYRERK
201: KYIEDIDWNM LAVPPTGSSK EEVQWVAWKK FLTFEKGNPQ RIDTALSTKR IIYVYEQCLM CLYHYPDVWY DYAEWHIKSG STDAAIKVFQ RALKAIPDSE
301: MLKYAYAELE EARGAIQSAK NLYESILGVS TNSLAQIQFL RFLRRAEGVE SARKYFLEAR KSPSCTYHVY IAFATMAFCL DKDPKVCFGR SGRSVNKPGE
401: FYDNELNAAH NIFEEGLKRY MTEPVYILEY ADFLTRLNDD RNIRALFERA LSTLPTEESA EVWNRFVQFE QTYGDLASIL KVEQRRKEAL FGKGEEGSPA
501: LDSSLQDVVS RYSYMDLWPC TSNELDHLSR QELLVKNMNK KVEKTNQPHG SAIIVNKSPC GLSGSVASSS KVVYPDTAQM VVHDPAKKSG IEFSTTATHV
601: SANTFDEIPK TTPPALLAFL ANLPHVDGPT PNVDVVLSIC LQSDLPTGQT AKQSFTAKGN VPSQNDPSGP NRGGSQRLPR DRRATKRKGS DRQEDDDTAS
701: IQSQPLPTDV FRLRQMRKAR GISTSSQTPT GSASYGSAYS GELSGSTG
001: MADKYIVEEA EALAKRALHS PIAQATPIYE QLLSLYPTSA RFWKQYVEAQ MAVNNDDATK QIFSRCLLTC LQVPLWQCYI RFIRKVYDKK GAEGQEETTK
101: AFEFMLNYIG TDIASGPIWT EYIAFLKSLP ALNLNEDLHR KTALRKVYHR AILTPTHHVE QLWKDYENFE NTVNRQLAKG LVNEYQPKFN SARAVYRERK
201: KYIEEIDWNM LAVPPTGTSK EETQWVAWKK FLSFEKGNPQ RIDTASSTKR IIYAYEQCLM CLYHYPDVWY DYAEWHVKSG STDAAIKVFQ RALKAIPDSE
301: MLKYAFAEME ESRGAIQSAK KLYENILGAS TNSLAHIQYL RFLRRAEGVE AARKYFLDAR KSPSCTYHVY IAFATMAFCI DKEPKVAHNI FEEGLKLYMS
401: EPVYILKYAD FLTRLNDDRN IRALFERALS TLPVEDSAEV WKRFIQFEQT YGDLASILKV EQRMKEALSG KGEEGSSPPE SSLQDVVSRY SYMDLWPCTS
501: NDLDHLARQE LLVKNLNKKA GKTNLPHVPA AIGSVASSSK VVYPDTSQMV VQDPTKKSEF ASSANPVAAS ASNTFPSTVT ATATHGSAST FDEIPKTTPP
601: ALVAFLANLP IVDGPTPNVD VVLSICLQSD FPTGQTVKQS FAAKGNPPSQ NDPSGPTRGV SQRLPRDRRA TKRKDSDRQE EDDTATVQSQ PLPTDVFRLR
701: QMRKARGIAT SSQTPTGSTS YGSAFSGELS GSTG
101: AFEFMLNYIG TDIASGPIWT EYIAFLKSLP ALNLNEDLHR KTALRKVYHR AILTPTHHVE QLWKDYENFE NTVNRQLAKG LVNEYQPKFN SARAVYRERK
201: KYIEEIDWNM LAVPPTGTSK EETQWVAWKK FLSFEKGNPQ RIDTASSTKR IIYAYEQCLM CLYHYPDVWY DYAEWHVKSG STDAAIKVFQ RALKAIPDSE
301: MLKYAFAEME ESRGAIQSAK KLYENILGAS TNSLAHIQYL RFLRRAEGVE AARKYFLDAR KSPSCTYHVY IAFATMAFCI DKEPKVAHNI FEEGLKLYMS
401: EPVYILKYAD FLTRLNDDRN IRALFERALS TLPVEDSAEV WKRFIQFEQT YGDLASILKV EQRMKEALSG KGEEGSSPPE SSLQDVVSRY SYMDLWPCTS
501: NDLDHLARQE LLVKNLNKKA GKTNLPHVPA AIGSVASSSK VVYPDTSQMV VQDPTKKSEF ASSANPVAAS ASNTFPSTVT ATATHGSAST FDEIPKTTPP
601: ALVAFLANLP IVDGPTPNVD VVLSICLQSD FPTGQTVKQS FAAKGNPPSQ NDPSGPTRGV SQRLPRDRRA TKRKDSDRQE EDDTATVQSQ PLPTDVFRLR
701: QMRKARGIAT SSQTPTGSTS YGSAFSGELS GSTG
Arabidopsis Description
CSTF77Cleavage stimulation factor subunit 77 [Source:UniProtKB/Swiss-Prot;Acc:Q8GUP1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.