CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77591
CDX83892
CDX94585
CDX96143
CDX96753
CDX98205
CDY12057
CDY16640
CDY36205

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G66500.1	CDX83892	AT1G17760.1	18479511
AT1G66500.1	CDX96753	AT1G17760.1	18479511
AT1G66500.1	CDX77591	AT1G30460.1	18479511
AT1G66500.1	CDX98205	AT1G30460.1	18479511
AT1G66500.1	CDY12057	AT1G30460.1	18479511
AT1G66500.1	CDX94585	AT4G04885.1	18479511
AT1G66500.1	CDY16640	AT4G04885.1	18479511
AT1G66500.1	CDX96143	AT5G43620.1	18479511
AT1G66500.1	CDY36205	AT5G43620.1	18479511
AT5G43620.1	CDX83892	AT1G17760.1	18479511
AT5G43620.1	CDX96753	AT1G17760.1	18479511
AT5G43620.1	CDX96143	AT1G66500.1	18479511
AT5G43620.1	CDY36205	AT1G66500.1	18479511
AT5G43620.1	CDX94585	AT4G04885.1	18479511
AT5G43620.1	CDY16640	AT4G04885.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004171.1-P	Field mustard	nucleus	48.54	88.84
CDY36205	Canola	nucleus	69.51	68.18
VIT_18s0086g00630.t01	Wine grape	cytosol	7.56	44.29
AT5G43620.1	Thale cress	nucleus	41.95	41.95
AT1G66500.1	Thale cress	nucleus	39.02	38.46
VIT_18s0086g00620.t01	Wine grape	extracellular	7.8	23.36
CDY16640	Canola	nucleus	24.88	13.18
CDX94585	Canola	nucleus	22.93	12.37
GSMUA_Achr6P18930_001	Banana	nucleus	24.39	12.17
Zm00001d000023_P004	Maize	nucleus	25.85	11.0
Zm00001d049442_P009	Maize	nucleus	25.37	10.75
CDY69913	Canola	nucleus	18.78	10.74
TraesCS7D01G290300.2	Wheat	nucleus	24.39	10.73
TraesCS7A01G294500.5	Wheat	nucleus	24.39	10.72
HORVU7Hr1G069840.2	Barley	plastid	25.37	10.59
Os08t0187700-01	Rice	cytosol	24.88	10.5
OQU80002	Sorghum	nucleus	24.39	10.47
CDY33156	Canola	nucleus	19.76	9.83
TraesCS7B01G181900.3	Wheat	nucleus	23.66	9.72
CDX75035	Canola	nucleus	19.51	7.9
CDY33157	Canola	nucleus	1.46	3.53

Protein Annotations

EnsemblPlants:CDX96143	EnsemblPlantsGene:GSBRNA2T00102200001	GO:A0A078E9U5	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR15921	ProteinID:CDX96143	ProteinID:CDX96143.1	ScanProsite:PS00028
SEG:seg	UniParc:UPI0004EECE5E	MapMan:16.2.1.5.2	:	:	:

Description

BnaA07g25880D

Coordinates

chrLK031892:+:1288220..1289515

Molecular Weight (calculated)

46042.1 Da

IEP (calculated)

9.430

GRAVY (calculated)

-0.850

Length

410 amino acids

Sequence
(BLAST)

001: MSSSNGVFAH QRNAHRNGGR TMLKRPIDNR GCRIGGFQEE EERSRYAPLQ KRPRYQQAQP QFQSAKPNGG GTPPMYRHHH DSNLSRVSNY GDVINSNSSN
101: VFPFALRNNR HSQSNKPYGY GNPNPQSVPL PLPYRKLDGF DSLPEWVPNF VPNTNREITG VRFNGNQLSQ APPVFTNLPN SMPLNHSNMV SVVSQSLPQQ
201: PVVSKELADL LSVLNNNEKE CDLGLDFDKS NLNVRHESVV KSLYSDMPRQ CSSCGVRFKG QEEHSKHMDW HVRKNRMAKD ATKAATTTRA SQKPKKSRDW
301: FASLSLWLSA ATGAAIEGAK PLFGETQKTK EEEKQQQRYV PADENQKMCA LCLESLEEFF SHEEDDWMYR DAAYLNMNGS GPIVHVNCMP EPRKGPAKGL
401: TKPVASAVAC

Best Arabidopsis Sequence Match ( AT1G66500.1 )
(BLAST)

001: MASNGSFSAQ RNANARTTMK RRSDNRGYGG GIGGYQEETN RYAPPQKRFR SQAQQQFRSG HNPLYHHHGS NNNNVSRVSS QSYNNCGVDV IASNSSFALR
101: NNDSNTNNYQ KPFVAGYGNP NPQIVPLPLP YRKLDDNLSL DSLPDWVPNS RTLTPNYPVR SSNFVPNTPV FTNVQNPMNH SNMVSVVSQS MHQPIVLSKE
201: LTDLLSLLNN EKEKKTLEAS NSDSLPVGLS FDNPSSLNVR HESVIKSLYS DMPRQCSSCG LRFKCQEEHS KHMDWHVRKN RSVKTTTRLG QQPKKSRGWL
301: ASASLWLCAA TGGETVEVAS FGGEMQKKKG KDEEPKQLMV PADEDQKNCA LCVEPFEEFF SHEDDDWMYK DAVYLTKNGR IVHVKCMPEP RPAKDLREPS
401: RVMSVTVPSV AKAIAC

Arabidopsis Description

PCFS1Polyadenylation and cleavage factor homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C710]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.