Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G290300.2 | Wheat | nucleus | 97.53 | 97.64 |
| TraesCS7B01G181900.3 | Wheat | nucleus | 98.18 | 91.78 |
| HORVU7Hr1G069840.2 | Barley | plastid | 93.03 | 88.39 |
| Os08t0187700-01 | Rice | cytosol | 71.7 | 68.9 |
| OQU80002 | Sorghum | nucleus | 66.24 | 64.71 |
| Zm00001d000023_P004 | Maize | nucleus | 65.92 | 63.8 |
| Zm00001d049442_P009 | Maize | nucleus | 65.7 | 63.39 |
| VIT_18s0086g00630.t01 | Wine grape | cytosol | 4.5 | 60.0 |
| GSMUA_Achr6P18930_001 | Banana | nucleus | 32.48 | 36.86 |
| VIT_18s0086g00620.t01 | Wine grape | extracellular | 5.36 | 36.5 |
| Bra029526.1-P | Field mustard | nucleus, plastid | 29.8 | 36.01 |
| CDX94585 | Canola | nucleus | 29.26 | 35.92 |
| CDY16640 | Canola | nucleus | 29.47 | 35.53 |
| AT4G04885.1 | Thale cress | nucleus | 30.23 | 34.9 |
| Bra004171.1-P | Field mustard | nucleus | 8.36 | 34.82 |
| KRH35569 | Soybean | cytosol | 32.26 | 32.65 |
| VIT_10s0116g00720.t01 | Wine grape | nucleus | 33.23 | 32.19 |
| PGSC0003DMT400075619 | Potato | nucleus | 33.65 | 32.17 |
| KRG91241 | Soybean | nucleus | 32.26 | 32.12 |
| Solyc12g094490.1.1 | Tomato | nucleus | 33.33 | 31.9 |
| KRH35574 | Soybean | nucleus | 13.08 | 30.27 |
| CDX96143 | Canola | nucleus | 10.72 | 24.39 |
| CDY36205 | Canola | nucleus | 10.83 | 24.16 |
| AT5G43620.1 | Thale cress | nucleus | 10.5 | 23.9 |
| AT1G66500.1 | Thale cress | nucleus | 10.07 | 22.6 |
| TraesCS4A01G301900.1 | Wheat | endoplasmic reticulum, extracellular, golgi | 20.15 | 21.08 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G294500.5 | EnsemblPlantsGene:TraesCS7A01G294500 | Gene3D:1.25.40.90 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:CID_dom | InterPro:ENTH_VHS | InterPro:IPR006569 | InterPro:IPR008942 | InterPro:IPR013087 | InterPro:RNA_pol_II-bd |
| InterPro:Znf_C2H2_type | PANTHER:PTHR15921 | PFAM:PF04818 | PFscan:PS51391 | ScanProsite:PS00028 | SEG:seg |
| SMART:SM00582 | SUPFAM:SSF48464 | TIGR:cd03562 | MapMan:16.2.1.5.2 | : | : |
Description
No Description!
Coordinates
chr7A:-:380176220..380183413
Molecular Weight (calculated)
103700.0 Da
IEP (calculated)
6.934
GRAVY (calculated)
-0.640
Length
933 amino acids
Sequence
(BLAST)
(BLAST)
001: MASAAAAAPV VGQVVERFRA RLREEAGEEP GAAAVVGVYK EALAELTFNC KPIITELTII AGQHAALAAR GIADVICARI LEVPVEQKLP SLYLLDSIVK
101: NIGREYVEDF ATRLQKVFCF AYREVHPKQH PAMRHLFRTW SQVFPSSVLQ GIEDELQFSP SENKRPATTT IPRQPESLSP RPSHGIHVNP KYLEAQHQLK
201: NGTKVDQLAT RGRQMLDVAE DHINGLTTNS LRGFPSTSSK LQRSMIPYTE NPDQQETFQS RIGLIRRDMS RSPPPDVLPR NASPKRPLEM PQLSHSVLGH
301: DPRRLPDRNG WFEWQHAFED SAQRPSMSTL DEEYRKQSAR ELIDAYGNSQ GNDADDRLPK MQRLESNGMA SRSSAQKWLT SEEEEYTWED MRPTLSRNRN
401: NILSLPSSET LRAGFPGPNT GQLDSDIGMR SWRSQAPRPA LNLEDRTGHV DIATSRRYPG NFGLQNGAIS EYHSSENTLD PGRILAMSAP PWQQTNGLPL
501: RIQAPQPSST LNRLALPTDV EMPVKMLATG GPYDAMHVDL PLTNRSSPAP APIEWPLHHH SQPPHNTKDI RGATDSLEVR PFIRHGVNSS VFVPRHLYDA
601: LDRKTVSTGN LAQPPYQHPD LLSSSQQNQG TNFGNQSQPH DVPQFHPHSH SHPPEAFRSF APSMPIAPPQ NPFQGQGGSA AVPPVTPLPN TFSVTPTVQP
701: YGVSSVSSFA LPPLHRGLPP ASLQMGPSSS QVGGPTTYFS GILSNLMNHG VITLEPSSQP QDSVGVDFNV DLKVRNESVI NALYQDLHRQ CKTCGLRFKC
801: QEEHRAHMDW HVTKNRNSKN RKQSSRKYFV TVGEWLRAAE TVGNDGVPSF ELTEPIPDRN EEKEMAVPAD ENQTTCALCQ EPFEDFYSDE TEEWMYKGAV
901: YMNAPDGNIV GLQRSHLGPI VHSKCRSGPS NIS
101: NIGREYVEDF ATRLQKVFCF AYREVHPKQH PAMRHLFRTW SQVFPSSVLQ GIEDELQFSP SENKRPATTT IPRQPESLSP RPSHGIHVNP KYLEAQHQLK
201: NGTKVDQLAT RGRQMLDVAE DHINGLTTNS LRGFPSTSSK LQRSMIPYTE NPDQQETFQS RIGLIRRDMS RSPPPDVLPR NASPKRPLEM PQLSHSVLGH
301: DPRRLPDRNG WFEWQHAFED SAQRPSMSTL DEEYRKQSAR ELIDAYGNSQ GNDADDRLPK MQRLESNGMA SRSSAQKWLT SEEEEYTWED MRPTLSRNRN
401: NILSLPSSET LRAGFPGPNT GQLDSDIGMR SWRSQAPRPA LNLEDRTGHV DIATSRRYPG NFGLQNGAIS EYHSSENTLD PGRILAMSAP PWQQTNGLPL
501: RIQAPQPSST LNRLALPTDV EMPVKMLATG GPYDAMHVDL PLTNRSSPAP APIEWPLHHH SQPPHNTKDI RGATDSLEVR PFIRHGVNSS VFVPRHLYDA
601: LDRKTVSTGN LAQPPYQHPD LLSSSQQNQG TNFGNQSQPH DVPQFHPHSH SHPPEAFRSF APSMPIAPPQ NPFQGQGGSA AVPPVTPLPN TFSVTPTVQP
701: YGVSSVSSFA LPPLHRGLPP ASLQMGPSSS QVGGPTTYFS GILSNLMNHG VITLEPSSQP QDSVGVDFNV DLKVRNESVI NALYQDLHRQ CKTCGLRFKC
801: QEEHRAHMDW HVTKNRNSKN RKQSSRKYFV TVGEWLRAAE TVGNDGVPSF ELTEPIPDRN EEKEMAVPAD ENQTTCALCQ EPFEDFYSDE TEEWMYKGAV
901: YMNAPDGNIV GLQRSHLGPI VHSKCRSGPS NIS
001: MENPRRPFDR SRDPGPMKKP RLSEESIRPV NSNARQFLSQ RTLGTATAVT VPPASSRFRV SGRETESSIV SDPSREAYQP QPVHPHYELV NQYKSALAEL
101: TFNSKPIITN LTIIAGENVH AAKAVVTAIC NNILEVPSDQ KLPTLYLLDS IVKNIGRDYI KYFGARLPEV FVKAYRQVDP PMHSNMRHLF GTWKGVFHPQ
201: TLQLIEKELG FNAKSDGSAA VVSTARAEPQ SQRPPHSIHV NPKYLERQRL QQSGRTKGMV TDVPETAPNL TRDSDRLERV SSIASGGSWV GPAKVNNIRR
301: PQRDLLSEPL YEKDIESIAG EYDYASDLPH NSRSVIKNVG SRITDDGCEK QWYGATNRDP DLISDQRDGL HSKSRTSNYA TARVENLESS GPSRNIGVPY
401: DSWKNSEEEE FMWDMHSRLS ETDVATINPK NELHAPDESE RLESENHLLK RPRFSALDPR FDPANSTNSY SSEQKDPSSI GHWAFSSTNA TSTATRKGIQ
501: PQPRVASSGI LPSSGSGSDR QSPLHDSTSK QNVTKQDVRR AHSLPQRDPR ASRFPAKQNV PRDDSVRLPS SSSQFKNTNM RELPVEIFDS KSAAENAPGL
601: TLASEATGQP NMSDLLEAVM KSGILSNNST CGAIKEESHD EVNPGALTLP AASKPKTLPI SLATDNLLAR LKVEQSSAPL VSCAASLTGI TSVQTSKEKS
701: KASDPLSCLL SSLVSKGLIS ASKTELPSAP SITQEHSPDH STNSSMSVSV VPADAQPSVL VKGPSTAPKV KGLAAPSETS KSEPKDLIGL KFRADKIREL
801: HPSVISSLFD DLPHLCTSCS VRLKQKEELD RHMELHDKKK LELSGTNSKC RVWFPKVDNW IAAKAGELEP EYEEVLSEPE SAIEDCQAVA ADETQCACIL
901: CGEVFEDYFS QEMAQWMFKG ASYLTNPPAN SEASGPIVHT GCLTTSSLQS LEVGIAIKQE IVE
101: TFNSKPIITN LTIIAGENVH AAKAVVTAIC NNILEVPSDQ KLPTLYLLDS IVKNIGRDYI KYFGARLPEV FVKAYRQVDP PMHSNMRHLF GTWKGVFHPQ
201: TLQLIEKELG FNAKSDGSAA VVSTARAEPQ SQRPPHSIHV NPKYLERQRL QQSGRTKGMV TDVPETAPNL TRDSDRLERV SSIASGGSWV GPAKVNNIRR
301: PQRDLLSEPL YEKDIESIAG EYDYASDLPH NSRSVIKNVG SRITDDGCEK QWYGATNRDP DLISDQRDGL HSKSRTSNYA TARVENLESS GPSRNIGVPY
401: DSWKNSEEEE FMWDMHSRLS ETDVATINPK NELHAPDESE RLESENHLLK RPRFSALDPR FDPANSTNSY SSEQKDPSSI GHWAFSSTNA TSTATRKGIQ
501: PQPRVASSGI LPSSGSGSDR QSPLHDSTSK QNVTKQDVRR AHSLPQRDPR ASRFPAKQNV PRDDSVRLPS SSSQFKNTNM RELPVEIFDS KSAAENAPGL
601: TLASEATGQP NMSDLLEAVM KSGILSNNST CGAIKEESHD EVNPGALTLP AASKPKTLPI SLATDNLLAR LKVEQSSAPL VSCAASLTGI TSVQTSKEKS
701: KASDPLSCLL SSLVSKGLIS ASKTELPSAP SITQEHSPDH STNSSMSVSV VPADAQPSVL VKGPSTAPKV KGLAAPSETS KSEPKDLIGL KFRADKIREL
801: HPSVISSLFD DLPHLCTSCS VRLKQKEELD RHMELHDKKK LELSGTNSKC RVWFPKVDNW IAAKAGELEP EYEEVLSEPE SAIEDCQAVA ADETQCACIL
901: CGEVFEDYFS QEMAQWMFKG ASYLTNPPAN SEASGPIVHT GCLTTSSLQS LEVGIAIKQE IVE
Arabidopsis Description
ENTH/VHS family protein [Source:TAIR;Acc:AT2G36480]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.