Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029526.1-P | Field mustard | nucleus, plastid | 69.68 | 72.93 |
| CDY16640 | Canola | nucleus | 68.81 | 71.83 |
| CDX94585 | Canola | nucleus | 66.71 | 70.92 |
| KRH35574 | Soybean | nucleus | 19.06 | 38.21 |
| KRH35569 | Soybean | cytosol | 42.82 | 37.53 |
| KRG91241 | Soybean | nucleus | 43.07 | 37.14 |
| PGSC0003DMT400075619 | Potato | nucleus | 44.68 | 36.99 |
| VIT_10s0116g00720.t01 | Wine grape | nucleus | 43.94 | 36.86 |
| Solyc12g094490.1.1 | Tomato | nucleus | 44.31 | 36.72 |
| GSMUA_Achr6P18930_001 | Banana | nucleus | 36.14 | 35.52 |
| TraesCS7A01G294500.5 | Wheat | nucleus | 34.9 | 30.23 |
| TraesCS7D01G290300.2 | Wheat | nucleus | 34.78 | 30.15 |
| Os08t0187700-01 | Rice | cytosol | 35.27 | 29.35 |
| HORVU7Hr1G069840.2 | Barley | plastid | 34.9 | 28.72 |
| TraesCS7B01G181900.3 | Wheat | nucleus | 34.78 | 28.16 |
| OQU80002 | Sorghum | nucleus | 32.05 | 27.12 |
| Zm00001d049442_P009 | Maize | nucleus | 31.93 | 26.68 |
| Zm00001d000023_P004 | Maize | nucleus | 31.81 | 26.66 |
| AT5G43620.1 | Thale cress | nucleus | 12.75 | 25.12 |
| AT1G66500.1 | Thale cress | nucleus | 12.62 | 24.52 |
| AT2G36480.1 | Thale cress | nucleus | 25.25 | 21.18 |
Protein Annotations
| Gene3D:1.25.40.90 | MapMan:16.2.1.5.2 | EntrezGene:825827 | UniProt:A0A178UZE0 | ProteinID:AAD03447.1 | ProteinID:AEE82437.1 |
| EMBL:AK119152 | EMBL:AK229122 | ArrayExpress:AT4G04885 | EnsemblPlantsGene:AT4G04885 | RefSeq:AT4G04885 | TAIR:AT4G04885 |
| RefSeq:AT4G04885-TAIR-G | EnsemblPlants:AT4G04885.1 | TAIR:AT4G04885.1 | Unigene:At.24314 | InterPro:CID_dom | InterPro:ENTH_VHS |
| GO:GO:0000003 | GO:GO:0000993 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0005737 | GO:GO:0005849 | GO:GO:0006139 | GO:GO:0006369 | GO:GO:0006378 |
| GO:GO:0006379 | GO:GO:0006397 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009911 | GO:GO:0009987 | GO:GO:0046872 | InterPro:IPR006569 |
| InterPro:IPR008942 | InterPro:IPR013087 | RefSeq:NP_680598.2 | ProteinID:OAO99379.1 | Symbol:PCFS4 | PFAM:PF04818 |
| PO:PO:0000293 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009031 | PO:PO:0009062 | PO:PO:0020148 |
| ScanProsite:PS00028 | PFscan:PS51391 | PANTHER:PTHR15921 | UniProt:Q0WPF2 | InterPro:RNA_pol_II-bd | SMART:SM00582 |
| SUPFAM:SSF48464 | UniParc:UPI0000196B4E | InterPro:Znf_C2H2_type | SEG:seg | : | : |
Description
PCFS4Polyadenylation and cleavage factor homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPF2]
Coordinates
chr4:+:2471866..2476025
Molecular Weight (calculated)
89232.7 Da
IEP (calculated)
6.261
GRAVY (calculated)
-0.664
Length
808 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSEKILNPR LVSINSTSRK GMSVELPQKP PPPPSLLDRF KALLNQREDE FGGGEEVLPP SMDEIVQLYE VVLGELTFNS KPIITDLTII AGEQREHGEG
101: IANAICTRIL EAPVEQKLPS LYLLDSIVKN IGRDYGRYFS SRLPEVFCLA YRQAHPSLHP SMRHLFGTWS SVFPPPVLRK IDMQLQLSSA ANQSSVGASE
201: PSQPTRGIHV NPKYLRRLEP SAAENNLRGI NSSARVYGQN SLGGYNDFED QLESPSSLSS TPDGFTRRSN DGANPSNQAF NYGMGRATSR DDEHMEWRRK
301: ENLGQGNDHE RPRALIDAYG VDTSKHVTIN KPIRDMNGMH SKMVTPWQNT EEEEFDWEDM SPTLDRSRAG EFLRSSVPAL GSVRARPRVG NTSDFHLDSD
401: IKNGVSHQLR ENWSLSQNYP HTSNRVDTRA GKDLKVLASS VGLVSSNSEF GAPPFDSIQD VNSRFGRALP DGTWPHLSAR GPNSLPVPSA HLHHLANPGN
501: AMSNRLQGKP LYRPENQVSQ SHLNDMTQQN QMLVNYLPSS SAMAPRPMQS LLTHVSHGYP PHGSTIRPSL SIQGGEAMHP LSSGVLSQIG ASNQPPGGAF
601: SGLIGSLMAQ GLISLNNQPA GQGPLGLEFD ADMLKIRNES AISALYGDLP RQCTTCGLRF KCQEEHSKHM DWHVTKNRMS KNHKQNPSRK WFVSASMWLS
701: GAEALGAEAV PGFLPTEPTT EKKDDEDMAV PADEDQTSCA LCGEPFEDFY SDETEEWMYK GAVYMNAPEE STTDMDKSQL GPIVHAKCRP ESNGGDMEEG
801: SQRKKMRS
101: IANAICTRIL EAPVEQKLPS LYLLDSIVKN IGRDYGRYFS SRLPEVFCLA YRQAHPSLHP SMRHLFGTWS SVFPPPVLRK IDMQLQLSSA ANQSSVGASE
201: PSQPTRGIHV NPKYLRRLEP SAAENNLRGI NSSARVYGQN SLGGYNDFED QLESPSSLSS TPDGFTRRSN DGANPSNQAF NYGMGRATSR DDEHMEWRRK
301: ENLGQGNDHE RPRALIDAYG VDTSKHVTIN KPIRDMNGMH SKMVTPWQNT EEEEFDWEDM SPTLDRSRAG EFLRSSVPAL GSVRARPRVG NTSDFHLDSD
401: IKNGVSHQLR ENWSLSQNYP HTSNRVDTRA GKDLKVLASS VGLVSSNSEF GAPPFDSIQD VNSRFGRALP DGTWPHLSAR GPNSLPVPSA HLHHLANPGN
501: AMSNRLQGKP LYRPENQVSQ SHLNDMTQQN QMLVNYLPSS SAMAPRPMQS LLTHVSHGYP PHGSTIRPSL SIQGGEAMHP LSSGVLSQIG ASNQPPGGAF
601: SGLIGSLMAQ GLISLNNQPA GQGPLGLEFD ADMLKIRNES AISALYGDLP RQCTTCGLRF KCQEEHSKHM DWHVTKNRMS KNHKQNPSRK WFVSASMWLS
701: GAEALGAEAV PGFLPTEPTT EKKDDEDMAV PADEDQTSCA LCGEPFEDFY SDETEEWMYK GAVYMNAPEE STTDMDKSQL GPIVHAKCRP ESNGGDMEEG
801: SQRKKMRS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.