CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88812
KXG22737
OQU80002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G66500.1	KXG22737	AT1G17760.1	18479511
AT1G66500.1	EER88812	AT1G30460.1	18479511
AT1G66500.1	OQU80002	AT4G04885.1	18479511
AT1G66500.1	OQU80002	AT5G43620.1	18479511
AT4G04885.1	EER88812	AT1G30460.1	18479511
AT4G04885.1	OQU80002	AT1G66500.1	18479511
AT4G04885.1	OQU80002	AT4G04885.1	18479511
AT4G04885.1	OQU80002	AT5G43620.1	18479511
AT5G43620.1	KXG22737	AT1G17760.1	18479511
AT5G43620.1	OQU80002	AT1G66500.1	18479511
AT5G43620.1	OQU80002	AT4G04885.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d000023_P004	Maize	nucleus	87.96	87.14
Zm00001d049442_P009	Maize	nucleus	88.17	87.07
Os08t0187700-01	Rice	cytosol	68.8	67.66
TraesCS7A01G294500.5	Wheat	nucleus	64.71	66.24
TraesCS7D01G290300.2	Wheat	nucleus	64.08	65.67
TraesCS7B01G181900.3	Wheat	nucleus	64.4	61.62
VIT_18s0086g00630.t01	Wine grape	cytosol	4.5	61.43
HORVU7Hr1G069840.2	Barley	plastid	63.14	61.41
VIT_18s0086g00620.t01	Wine grape	extracellular	5.76	40.15
GSMUA_Achr6P18930_001	Banana	nucleus	31.83	36.98
Bra004171.1-P	Field mustard	nucleus	8.17	34.82
Bra029526.1-P	Field mustard	nucleus, plastid	27.33	33.81
CDY16640	Canola	nucleus	27.02	33.33
CDX94585	Canola	nucleus	26.49	33.29
VIT_10s0116g00720.t01	Wine grape	nucleus	33.09	32.81
KRH35569	Soybean	cytosol	31.31	32.43
AT4G04885.1	Thale cress	nucleus	27.12	32.05
KRG91241	Soybean	nucleus	30.89	31.48
Solyc12g094490.1.1	Tomato	nucleus	31.94	31.28
PGSC0003DMT400075619	Potato	nucleus	31.94	31.25
KRH35574	Soybean	nucleus	12.77	30.27
CDX96143	Canola	nucleus	10.47	24.39
CDY36205	Canola	nucleus	10.37	23.68
AT5G43620.1	Thale cress	nucleus	9.84	22.93
AT1G66500.1	Thale cress	nucleus	9.53	21.88
OQU89013	Sorghum	nucleus	20.94	19.49

Protein Annotations

Gene3D:1.25.40.90	MapMan:16.2.1.5.2	EntrezGene:8071118	UniProt:C5YI06	InterPro:CID_dom	ProteinID:EES14664.1
InterPro:ENTH_VHS	GO:GO:0000993	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005737	GO:GO:0005849	GO:GO:0006139	GO:GO:0006369	GO:GO:0006378
GO:GO:0006379	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR006569
InterPro:IPR008942	InterPro:IPR013087	EnsemblPlants:OQU80002	ProteinID:OQU80002	ProteinID:OQU80002.1	PFAM:PF04818
ScanProsite:PS00028	PFscan:PS51391	PANTHER:PTHR15921	InterPro:RNA_pol_II-bd	SMART:SM00582	EnsemblPlantsGene:SORBI_3007G065400
SUPFAM:SSF48464	UniParc:UPI0001A87D56	RefSeq:XP_002445169.1	InterPro:Znf_C2H2_type	SEG:seg	:

Description

hypothetical protein

Coordinates

chr7:-:6937950..6946983

Molecular Weight (calculated)

105448.0 Da

IEP (calculated)

7.012

GRAVY (calculated)

-0.613

Length

955 amino acids

Sequence
(BLAST)

001: MAGAAASPVG GHVVERFRSR LREEAGGGEP GAAAVVRVYA EALRELTFNC KPVITELTII AGQHAALAAR GIADAVCARV AEVPPDQILP SLYLLDSIVK
101: NIGGEYVEHF ATRLQSVFVD AYYRVHPNQY TSMRRLFRTW WPVFPSSVLH GIEDDLQFSP SETNRPTTST NQTESLSPRL SHGIHVNPKY LEAQHKFKQA
201: NVAHQSAARD TTQMTDVQED LINGLPSNSS RGRPSMFQKS SLQYADNPDQ QETFRPLAGT IRVTSPHLLS THSSDVNLDG PLVNSRRNMS RSPPLDVFPR
301: NVSPKRALER LPPSHSVLGP DPRKLPDRNG RLRLVFDDGV QRSTISMLDE EYRKQSAREL IDAYGNCQGR DADERLPKVQ RLDPNGMASR SSARNWLTSE
401: EEEYSWEDMS PTLTDRVRSS MPSFPPGTMR AGFPGANAGL LESDVGRHNF PSQITRSSVD GPPYNLEDRI TTASHVDIST RRYPSNFGVQ NGALLEYQNS
501: EDTLNHGRID TMPAPPWQKP TGLPLRIQAP QHPSVLDRIP QPANGEMAVK RLDISGTYNG LNVDNIPLVE KHRSSPSAPI EWLPLHHTRS QTLPLIPPDT
601: KHVRSAPNSL EISSFVSQGA SSSVFVPRHQ YDALDRKTVT GNLAQPPYQH QDLLPSSQQN QGTILGNQAH PHRPTQLHPH PHSHSHHQET FRSFASGMSV
701: SPFQGQGGNA TMTPVSVLPT SFSVPPAVPP YGVPPLPPGP PPVPLQMGSS SSQVGGPQPF VSGLLSNLMR HGVISLEPPS QSQDSVGVDF NVDLKLRNES
801: VINALYQDLS RQCKTCGLRF KCQEEHRAHM DWHVTKNRNS KNRKQSSRKY FVTVGEWLRA AETVGNDGVP AFVPSDPVPD RKEEKEIAVP ADEEQTACAL
901: CQEPFEDFYS DETDEWMYRG AVYMNAPDGN IDGLERSQLG PIVHAKCRSG PSNTS

Best Arabidopsis Sequence Match ( AT4G04885.1 )
(BLAST)

001: MDSEKILNPR LVSINSTSRK GMSVELPQKP PPPPSLLDRF KALLNQREDE FGGGEEVLPP SMDEIVQLYE VVLGELTFNS KPIITDLTII AGEQREHGEG
101: IANAICTRIL EAPVEQKLPS LYLLDSIVKN IGRDYGRYFS SRLPEVFCLA YRQAHPSLHP SMRHLFGTWS SVFPPPVLRK IDMQLQLSSA ANQSSVGASE
201: PSQPTRGIHV NPKYLRRLEP SAAENNLRGI NSSARVYGQN SLGGYNDFED QLESPSSLSS TPDGFTRRSN DGANPSNQAF NYGMGRATSR DDEHMEWRRK
301: ENLGQGNDHE RPRALIDAYG VDTSKHVTIN KPIRDMNGMH SKMVTPWQNT EEEEFDWEDM SPTLDRSRAG EFLRSSVPAL GSVRARPRVG NTSDFHLDSD
401: IKNGVSHQLR ENWSLSQNYP HTSNRVDTRA GKDLKVLASS VGLVSSNSEF GAPPFDSIQD VNSRFGRALP DGTWPHLSAR GPNSLPVPSA HLHHLANPGN
501: AMSNRLQGKP LYRPENQVSQ SHLNDMTQQN QMLVNYLPSS SAMAPRPMQS LLTHVSHGYP PHGSTIRPSL SIQGGEAMHP LSSGVLSQIG ASNQPPGGAF
601: SGLIGSLMAQ GLISLNNQPA GQGPLGLEFD ADMLKIRNES AISALYGDLP RQCTTCGLRF KCQEEHSKHM DWHVTKNRMS KNHKQNPSRK WFVSASMWLS
701: GAEALGAEAV PGFLPTEPTT EKKDDEDMAV PADEDQTSCA LCGEPFEDFY SDETEEWMYK GAVYMNAPEE STTDMDKSQL GPIVHAKCRP ESNGGDMEEG
801: SQRKKMRS

Arabidopsis Description

PCFS4Polyadenylation and cleavage factor homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPF2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.