Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU80002 | Sorghum | nucleus | 87.07 | 88.17 |
| Zm00001d000023_P004 | Maize | nucleus | 87.49 | 87.76 |
| Os08t0187700-01 | Rice | cytosol | 68.46 | 68.18 |
| TraesCS7A01G294500.5 | Wheat | nucleus | 63.39 | 65.7 |
| TraesCS7D01G290300.2 | Wheat | nucleus | 62.77 | 65.13 |
| VIT_18s0086g00630.t01 | Wine grape | cytosol | 4.45 | 61.43 |
| HORVU7Hr1G069840.2 | Barley | plastid | 62.25 | 61.3 |
| TraesCS7B01G181900.3 | Wheat | nucleus | 63.08 | 61.12 |
| VIT_18s0086g00620.t01 | Wine grape | extracellular | 5.48 | 38.69 |
| GSMUA_Achr6P18930_001 | Banana | nucleus | 32.06 | 37.71 |
| Bra004171.1-P | Field mustard | nucleus | 8.17 | 35.27 |
| Bra029526.1-P | Field mustard | nucleus, plastid | 27.09 | 33.94 |
| CDY16640 | Canola | nucleus | 26.78 | 33.46 |
| CDX94585 | Canola | nucleus | 26.27 | 33.42 |
| VIT_10s0116g00720.t01 | Wine grape | nucleus | 33.09 | 33.23 |
| KRH35569 | Soybean | cytosol | 30.71 | 32.21 |
| AT4G04885.1 | Thale cress | nucleus | 26.68 | 31.93 |
| PGSC0003DMT400075619 | Potato | nucleus | 32.16 | 31.86 |
| KRG91241 | Soybean | nucleus | 30.71 | 31.7 |
| Solyc12g094490.1.1 | Tomato | nucleus | 31.85 | 31.59 |
| KRH35574 | Soybean | nucleus | 13.03 | 31.27 |
| CDX96143 | Canola | nucleus | 10.75 | 25.37 |
| CDY36205 | Canola | nucleus | 10.75 | 24.88 |
| AT5G43620.1 | Thale cress | nucleus | 9.62 | 22.68 |
| AT1G66500.1 | Thale cress | nucleus | 9.2 | 21.39 |
| Zm00001d019856_P005 | Maize | plastid | 20.48 | 17.93 |
| Zm00001d005350_P005 | Maize | plastid | 20.27 | 16.88 |
Protein Annotations
| Gene3D:1.25.40.90 | MapMan:16.2.1.5.2 | UniProt:A0A1D6PUR4 | ProteinID:AQK50355.1 | ProteinID:AQK50356.1 | ProteinID:AQK50358.1 |
| ProteinID:AQK50359.1 | InterPro:CID_dom | InterPro:ENTH_VHS | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR006569 | InterPro:IPR008942 | InterPro:IPR013087 | ScanProsite:PS00028 | PFscan:PS51391 | PANTHER:PTHR15921 |
| SMART:SM00582 | SUPFAM:SSF48464 | UniParc:UPI0008450146 | EnsemblPlantsGene:Zm00001d049442 | EnsemblPlants:Zm00001d049442_P009 | EnsemblPlants:Zm00001d049442_T009 |
| InterPro:Znf_C2H2_type | SEG:seg | : | : | : | : |
Description
Polyadenylation and cleavage factor homolog 5
Coordinates
chr4:+:30465252..30474792
Molecular Weight (calculated)
107004.0 Da
IEP (calculated)
6.883
GRAVY (calculated)
-0.598
Length
967 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGAAASPAA GHVVERFRSR LREEAGGGEP GAAAVVHVYA EALRELTFNC KPVITELTII AGQHATLAAG GIADAICARV AEVPPDQILP SLYLLDSIVK
101: NIGGEYVEHF ATRLRSVFVD AYYRVHPNQY TSMRRLFRTW WPVFPSSVLR SIEDDLQFSS SENNRPTTST NLHQTESLSP RPSHGIHVNP KYLEAQHKFK
201: QANVVHQPAA RDTRQMTDVQ EDLINGLASN SSCERPSIFQ KSSLQYADDP DQQETFRPLA GTRAASPHLL STHASDMNLD GPLVNSRRNL SISPPLDVFS
301: RNVSPKRALE RLPPSHSVLG PDPRKFTDRN GRLRWGLDDG AQRPTISMLD EEYRKQSARE LIDAYGNCQG RDADERLPKV QRLDPNGMAS RSSARNWLTS
401: EEEEYSWEDM SPTLTDRVSS SMPSFPPGTM RTGFPGANAG LLESDVGRHN FPSQATRLSV DGSPFNLEDR FSTASEHLYL LQHVNMSTRR YPSNFGVQNG
501: ALLKFQNSEH ALNHGRIATM PAPPWQQPTG LPLQMQAPQH SSALDRLPQP ADSEMPVKRL DIRGTYNGLN VDRSLAEKHR SSPARAPTEW LPLHHTPSQT
601: LPLIIPETKH VRSASDSLEI SSFVSQGASS SVFVPHHQYD ALDRKTGTRN LAQPPYQHQD LLLPSQQNQG TILGNQVHPH LPQQLHPHSH PHHQETFRSF
701: APGMTVSPFQ GQGGNATMTP VSVLPTFSVP PAVPPYGVLS APGFPMPPLP PGPPPVPLQM GSSSSQVGGP QPFVSGLLSN LMRHGVISLE PPSQSQDSVG
801: VDFNVDLKVR NEPVINALYQ DLSRQCKTCG LRFKCQEEHR AHMDWHVTKN RNSKNRKQSS RKYFVTVEEW LRAAETVGND GVPAFVPSDP VPDRKEEREI
901: AVPADEEQTA CALCQEPFED FYSDETDEWM YRGAVYMNAP DGNIDGLERS RLGPIVHAKC RSGPSNT
101: NIGGEYVEHF ATRLRSVFVD AYYRVHPNQY TSMRRLFRTW WPVFPSSVLR SIEDDLQFSS SENNRPTTST NLHQTESLSP RPSHGIHVNP KYLEAQHKFK
201: QANVVHQPAA RDTRQMTDVQ EDLINGLASN SSCERPSIFQ KSSLQYADDP DQQETFRPLA GTRAASPHLL STHASDMNLD GPLVNSRRNL SISPPLDVFS
301: RNVSPKRALE RLPPSHSVLG PDPRKFTDRN GRLRWGLDDG AQRPTISMLD EEYRKQSARE LIDAYGNCQG RDADERLPKV QRLDPNGMAS RSSARNWLTS
401: EEEEYSWEDM SPTLTDRVSS SMPSFPPGTM RTGFPGANAG LLESDVGRHN FPSQATRLSV DGSPFNLEDR FSTASEHLYL LQHVNMSTRR YPSNFGVQNG
501: ALLKFQNSEH ALNHGRIATM PAPPWQQPTG LPLQMQAPQH SSALDRLPQP ADSEMPVKRL DIRGTYNGLN VDRSLAEKHR SSPARAPTEW LPLHHTPSQT
601: LPLIIPETKH VRSASDSLEI SSFVSQGASS SVFVPHHQYD ALDRKTGTRN LAQPPYQHQD LLLPSQQNQG TILGNQVHPH LPQQLHPHSH PHHQETFRSF
701: APGMTVSPFQ GQGGNATMTP VSVLPTFSVP PAVPPYGVLS APGFPMPPLP PGPPPVPLQM GSSSSQVGGP QPFVSGLLSN LMRHGVISLE PPSQSQDSVG
801: VDFNVDLKVR NEPVINALYQ DLSRQCKTCG LRFKCQEEHR AHMDWHVTKN RNSKNRKQSS RKYFVTVEEW LRAAETVGND GVPAFVPSDP VPDRKEEREI
901: AVPADEEQTA CALCQEPFED FYSDETDEWM YRGAVYMNAP DGNIDGLERS RLGPIVHAKC RSGPSNT
001: MDSEKILNPR LVSINSTSRK GMSVELPQKP PPPPSLLDRF KALLNQREDE FGGGEEVLPP SMDEIVQLYE VVLGELTFNS KPIITDLTII AGEQREHGEG
101: IANAICTRIL EAPVEQKLPS LYLLDSIVKN IGRDYGRYFS SRLPEVFCLA YRQAHPSLHP SMRHLFGTWS SVFPPPVLRK IDMQLQLSSA ANQSSVGASE
201: PSQPTRGIHV NPKYLRRLEP SAAENNLRGI NSSARVYGQN SLGGYNDFED QLESPSSLSS TPDGFTRRSN DGANPSNQAF NYGMGRATSR DDEHMEWRRK
301: ENLGQGNDHE RPRALIDAYG VDTSKHVTIN KPIRDMNGMH SKMVTPWQNT EEEEFDWEDM SPTLDRSRAG EFLRSSVPAL GSVRARPRVG NTSDFHLDSD
401: IKNGVSHQLR ENWSLSQNYP HTSNRVDTRA GKDLKVLASS VGLVSSNSEF GAPPFDSIQD VNSRFGRALP DGTWPHLSAR GPNSLPVPSA HLHHLANPGN
501: AMSNRLQGKP LYRPENQVSQ SHLNDMTQQN QMLVNYLPSS SAMAPRPMQS LLTHVSHGYP PHGSTIRPSL SIQGGEAMHP LSSGVLSQIG ASNQPPGGAF
601: SGLIGSLMAQ GLISLNNQPA GQGPLGLEFD ADMLKIRNES AISALYGDLP RQCTTCGLRF KCQEEHSKHM DWHVTKNRMS KNHKQNPSRK WFVSASMWLS
701: GAEALGAEAV PGFLPTEPTT EKKDDEDMAV PADEDQTSCA LCGEPFEDFY SDETEEWMYK GAVYMNAPEE STTDMDKSQL GPIVHAKCRP ESNGGDMEEG
801: SQRKKMRS
101: IANAICTRIL EAPVEQKLPS LYLLDSIVKN IGRDYGRYFS SRLPEVFCLA YRQAHPSLHP SMRHLFGTWS SVFPPPVLRK IDMQLQLSSA ANQSSVGASE
201: PSQPTRGIHV NPKYLRRLEP SAAENNLRGI NSSARVYGQN SLGGYNDFED QLESPSSLSS TPDGFTRRSN DGANPSNQAF NYGMGRATSR DDEHMEWRRK
301: ENLGQGNDHE RPRALIDAYG VDTSKHVTIN KPIRDMNGMH SKMVTPWQNT EEEEFDWEDM SPTLDRSRAG EFLRSSVPAL GSVRARPRVG NTSDFHLDSD
401: IKNGVSHQLR ENWSLSQNYP HTSNRVDTRA GKDLKVLASS VGLVSSNSEF GAPPFDSIQD VNSRFGRALP DGTWPHLSAR GPNSLPVPSA HLHHLANPGN
501: AMSNRLQGKP LYRPENQVSQ SHLNDMTQQN QMLVNYLPSS SAMAPRPMQS LLTHVSHGYP PHGSTIRPSL SIQGGEAMHP LSSGVLSQIG ASNQPPGGAF
601: SGLIGSLMAQ GLISLNNQPA GQGPLGLEFD ADMLKIRNES AISALYGDLP RQCTTCGLRF KCQEEHSKHM DWHVTKNRMS KNHKQNPSRK WFVSASMWLS
701: GAEALGAEAV PGFLPTEPTT EKKDDEDMAV PADEDQTSCA LCGEPFEDFY SDETEEWMYK GAVYMNAPEE STTDMDKSQL GPIVHAKCRP ESNGGDMEEG
801: SQRKKMRS
Arabidopsis Description
PCFS4Polyadenylation and cleavage factor homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPF2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.