Factsheet for Zm00001d014378_P001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000023_P004
Zm00001d004153_P002
Zm00001d004154_P002
Zm00001d012429_P002
Zm00001d013380_P001
Zm00001d014378_P001
Zm00001d014379_P001
Zm00001d021105_P001
Zm00001d022535_P004
Zm00001d028920_P004
Zm00001d033843_P007
Zm00001d034054_P002
Zm00001d036594_P001
Zm00001d036595_P001
Zm00001d038093_P007
Zm00001d044213_P001
Zm00001d044552_P006
Zm00001d047607_P001
Zm00001d049442_P009

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30460.1	Zm00001d038093_P007	AT1G17760.1	18479511
AT1G30460.1	Zm00001d014378_P001	AT1G30460.1	18479511
AT1G30460.1	Zm00001d014379_P001	AT1G30460.1	18479511
AT1G30460.1	Zm00001d036594_P001	AT1G30460.1	18479511
AT1G30460.1	Zm00001d036595_P001	AT1G30460.1	18479511
AT1G30460.1	Zm00001d000023_P004	AT1G66500.1	18479511
AT1G30460.1	Zm00001d049442_P009	AT1G66500.1	18479511
AT1G30460.1	Zm00001d044213_P001	AT2G01730.1	16897494
AT1G30460.1	Zm00001d012429_P002	AT3G06560.1	16897494
AT1G30460.1	Zm00001d021105_P001	AT3G06560.1	16897494
AT1G30460.1	Zm00001d022535_P004	AT3G06560.1	16897494
AT1G30460.1	Zm00001d028920_P004	AT3G06560.1	16897494
AT1G30460.1	Zm00001d047607_P001	AT3G06560.1	16897494
AT1G30460.1	Zm00001d012429_P002	AT3G06560.1	18479511
AT1G30460.1	Zm00001d021105_P001	AT3G06560.1	18479511
AT1G30460.1	Zm00001d022535_P004	AT3G06560.1	18479511
AT1G30460.1	Zm00001d028920_P004	AT3G06560.1	18479511
AT1G30460.1	Zm00001d047607_P001	AT3G06560.1	18479511
AT1G30460.1	Zm00001d000023_P004	AT4G04885.1	18479511
AT1G30460.1	Zm00001d049442_P009	AT4G04885.1	18479511
AT1G30460.1	Zm00001d044552_P006	AT5G23880.1	16897494
AT1G30460.1	Zm00001d044552_P006	AT5G23880.1	18479511
AT1G30460.1	Zm00001d004153_P002	AT5G51660.1	16897494
AT1G30460.1	Zm00001d004154_P002	AT5G51660.1	16897494
AT1G30460.1	Zm00001d004153_P002	AT5G51660.1	18479511
AT1G30460.1	Zm00001d004154_P002	AT5G51660.1	18479511
AT1G30460.1	Zm00001d013380_P001	AT5G58040.1	16282318
AT1G30460.1	Zm00001d033843_P007	AT5G58040.1	16282318
AT1G30460.1	Zm00001d013380_P001	AT5G58040.1	18479511
AT1G30460.1	Zm00001d033843_P007	AT5G58040.1	18479511
AT1G30460.1	Zm00001d034054_P002	AT5G60940.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014379_P001	Maize	nucleus	37.81	98.37
EER88812	Sorghum	cytosol, nucleus, peroxisome	96.88	96.12
Zm00001d036595_P001	Maize	nucleus	36.25	92.43
Zm00001d036594_P001	Maize	cytosol, nucleus, peroxisome	91.88	90.88
TraesCS7D01G450100.1	Wheat	nucleus	83.91	82.62
TraesCS7A01G461800.1	Wheat	nucleus	83.75	82.46
HORVU7Hr1G106340.5	Barley	cytosol	83.28	82.13
TraesCS7B01G363200.2	Wheat	nucleus	83.44	81.78
Os06t0677700-00	Rice	cytosol, nucleus, plasma membrane	86.72	80.9
GSMUA_Achr6P19820_001	Banana	nucleus	65.62	60.69
GSMUA_Achr9P30440_001	Banana	nucleus	60.78	59.21
KRH36762	Soybean	nucleus	62.19	58.44
VIT_10s0003g04600.t01	Wine grape	nucleus	61.09	58.1
CDX98205	Canola	nucleus	49.22	57.9
KRH11760	Soybean	nucleus	62.5	57.89
AT1G30460.1	Thale cress	nucleus	56.41	57.21
Solyc02g070240.2.1	Tomato	nucleus	58.91	56.18
Bra014881.1-P	Field mustard	nucleus	50.62	55.86
CDX77591	Canola	nucleus	50.47	54.29
Bra010767.1-P	Field mustard	nucleus	53.44	54.29
Solyc02g021760.2.1	Tomato	nucleus	55.94	51.96
CDY12057	Canola	cytosol, nucleus, peroxisome	52.81	51.52
PGSC0003DMT400054373	Potato	cytosol, nucleus, plastid	18.28	43.98

Protein Annotations

MapMan:16.2.1.2.5	Gene3D:3.10.590.10	Gene3D:4.10.1000.10	UniProt:A0A1D6GST8	ProteinID:AQK66078.1	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0046872	InterPro:IPR000571
InterPro:IPR007275	PFAM:PF04146	PFscan:PS50103	PFscan:PS50882	PANTHER:PTHR12357	PANTHER:PTHR12357:SF59
SMART:SM00356	SUPFAM:SSF90229	UniParc:UPI0008424E70	InterPro:YTH_domain	EnsemblPlantsGene:Zm00001d014378	EnsemblPlants:Zm00001d014378_P001
EnsemblPlants:Zm00001d014378_T001	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg	:	:

Description

30-kDa cleavage and polyadenylation specificity factor 30

Coordinates

chr5:-:43720208..43733858

Molecular Weight (calculated)

69982.1 Da

IEP (calculated)

6.780

GRAVY (calculated)

-0.891

Length

640 amino acids

Sequence
(BLAST)

001: MDDGDGGLSF DFEGGLDSAP AAGGPVPSST DPGAGGGDGP GMHGRGRGRG SYRQTVCRHW LRGLCMKGEA CGFLHQFDKA RMPVCRFFRD FGECREPDCA
101: YKHSYDDVKE CNMYKMGFCP NGPNCRYKHI KLPGPPPSVE EVLQKILQMR SFNRYSQNRN SNYNQQGERP QHPQGSALPN QNSAENATAA APPAGGQQAQ
201: TLNQQPPQQQ QKPNTNDQAQ GVSNGHQATR IATPLPQGPS RYFIVKSCNR ENLEISVQQG IWATQRSNEA KLNEAFESTE NVILIFSINR TRNFQGCAKM
301: TSRIGGYIGG GNWKSAHGTA HFGRNFSMQW LKLCELSFQK THHLRNPYND NLPVKISRDC QELEPFVGEQ LASLLYLEPD SELTAMLIAA EAKREEEKAK
401: GVSADEAADN QDIVLFDDNE EDEEEESEEE EGNAQESQGR GRGRGMMWPP QMPMMRGAML AGRGFPPNMM GDGFGFGGGF GMPDPFGMPR GFPPFVGPRF
501: PGDFARGPMP GMGFPGRPPQ PFPLGLDMMM GPGRGPLMGG MGMGGPGRPN RPMGMAPFMP PPPPNNRAAK REQRRPGGDR GDRFETASAL DQGSRGHDNT
601: GNPGADGARA QSGDRYGRSA LRDDDSESEE EAAPRRSRKR

Best Arabidopsis Sequence Match ( AT1G30460.1 )
(BLAST)

001: MEDADGLSFD FEGGLDSGPV QNTASVPVAP PENSSSAAVN VAPTYDHSSA TVAGAGRGRS FRQTVCRHWL RGLCMKGDAC GFLHQFDKAR MPICRFFRLY
101: GECREQDCVY KHTNEDIKEC NMYKLGFCPN GPDCRYRHAK LPGPPPPVEE VLQKIQQLTT YNYGTNRLYQ ARNVAPQLQD RPQGQVPMQG QPQESGNLQQ
201: QQQQQPQQSQ HQVSQTLIPN PADQTNRTSH PLPQGVNRYF VVKSNNRENF ELSVQQGVWA TQRSNEAKLN EAFDSVENVI LIFSVNRTRH FQGCAKMTSR
301: IGGYIGGGNW KHEHGTAQYG RNFSVKWLKL CELSFHKTRN LRNPYNENLP VKISRDCQEL EPSVGEQLAS LLYLEPDSEL MAISIAAEAK REEEKAKGVN
401: PESRAENPDI VPFEDNEEEE EEEDESEEEE ESMAGGPQGR GRGRGIMWPP QMPLGRGIRP MPGMGGFPLG VMGPGDAFPY GPGGYNGMPD PFGMGPRPFG
501: PYGPRFGGDF RGPVPGMMFP GRPPQQFPHG GYGMMGGGRG PHMGGMGNAP RGGRPMYYPP ATSSARPGPS NRKTPERSDE RGVSGDQQNQ DASHDMEQFE
601: VGNSLRNEES ESEDEDEAPR RSRHGEGKKR R

Arabidopsis Description

CPSF3030-kDa cleavage and polyadenylation specificity factor 30 [Source:UniProtKB/Swiss-Prot;Acc:A9LNK9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.