Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH11760 | Soybean | nucleus | 86.64 | 85.38 |
| VIT_10s0003g04600.t01 | Wine grape | nucleus | 72.39 | 73.25 |
| Solyc02g070240.2.1 | Tomato | nucleus | 65.49 | 66.47 |
| CDX98205 | Canola | nucleus | 52.72 | 65.99 |
| GSMUA_Achr6P19820_001 | Banana | nucleus | 65.93 | 64.88 |
| AT1G30460.1 | Thale cress | nucleus | 59.77 | 64.5 |
| Solyc02g021760.2.1 | Tomato | nucleus | 64.76 | 64.01 |
| GSMUA_Achr9P30440_001 | Banana | nucleus | 61.23 | 63.47 |
| Bra014881.1-P | Field mustard | nucleus | 54.04 | 63.45 |
| EER88812 | Sorghum | cytosol, nucleus, peroxisome | 59.03 | 62.33 |
| Zm00001d014378_P001 | Maize | cytosol, nucleus, peroxisome | 58.44 | 62.19 |
| Bra010767.1-P | Field mustard | nucleus | 57.42 | 62.06 |
| Zm00001d036594_P001 | Maize | cytosol, nucleus, peroxisome | 58.0 | 61.05 |
| HORVU7Hr1G106340.5 | Barley | cytosol | 57.86 | 60.71 |
| TraesCS7D01G450100.1 | Wheat | nucleus | 57.86 | 60.62 |
| TraesCS7A01G461800.1 | Wheat | nucleus | 57.71 | 60.46 |
| TraesCS7B01G363200.2 | Wheat | nucleus | 57.86 | 60.34 |
| CDX77591 | Canola | nucleus | 51.98 | 59.5 |
| Os06t0677700-00 | Rice | cytosol, nucleus, plasma membrane | 58.44 | 58.02 |
| CDY12057 | Canola | cytosol, nucleus, peroxisome | 54.92 | 57.01 |
| Zm00001d014379_P001 | Maize | nucleus | 20.56 | 56.91 |
| Zm00001d036595_P001 | Maize | nucleus | 20.7 | 56.18 |
| PGSC0003DMT400054373 | Potato | cytosol, nucleus, plastid | 21.15 | 54.14 |
| KRH27989 | Soybean | cytosol | 13.22 | 33.58 |
| KRH77450 | Soybean | nucleus | 14.54 | 25.0 |
Protein Annotations
| EntrezGene:100787159 | MapMan:16.2.1.2.5 | Gene3D:3.10.590.10 | Gene3D:4.10.1000.10 | EMBL:ACUP02005392 | EnsemblPlantsGene:GLYMA_09G022200 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0046872 | UniProt:I1L0D3 |
| InterPro:IPR000571 | InterPro:IPR007275 | EnsemblPlants:KRH36762 | ProteinID:KRH36762 | ProteinID:KRH36762.1 | PFAM:PF04146 |
| PFscan:PS50103 | PFscan:PS50882 | PANTHER:PTHR12357 | PANTHER:PTHR12357:SF59 | SMART:SM00356 | SUPFAM:SSF90229 |
| UniParc:UPI0002337E97 | InterPro:YTH_domain | InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr9:+:1768516..1778073
Molecular Weight (calculated)
74151.6 Da
IEP (calculated)
6.611
GRAVY (calculated)
-0.835
Length
681 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDSEGVLSF DFEGGLDAAP SSAAAAPSGP LIPHDSSAAA SAVSNGGPAA PAPSAVDPVG GGNVPGRRSF RQTVCRHWLR SLCMKGDACG FLHQYDKARM
101: PVCRFFRLYG ECREQDCVYK HTNEDIKECN MYKLGFCPNG PDCRYRHAKS PGPPPPVEEV LQKIQHLYSY NYNSSNKFFQ QRGASYNQQA EKPLLPQGNN
201: STNQGVTGNP LPAELGNAQP QQQVQQSQQQ VNQSQMQNVA NGQPNQANRT ATPLPQGISR YFIVKSCNRE NLELSVQQGV WATQRSNESK LNEAFDSVEN
301: VILIFSVNRT RHFQGCAKMT SKIGGSVAGG NWKYAHGTAH YGRNFSVKWL KLCELSFHKT RHLRNPYNEN LPVKISRDCQ ELEPSIGEQL ASLLYLEPDS
401: ELMAISVAAE SKREEEKAKG VNPDNGGENP DIVPFEDNEE EEEEESDEEE ESFGHGVGPA GQGRGRGRGM MWPPHMPLGR GARPMPGMQG FNPVMMGDGL
501: SYGPVGPDGF GMPDLFGVGP RGFAPYGPRF SGDFGGPPAA MMFRGRPSQP GMFPGGGFGM MLNPGRGPFM GGIGVGGANP PRGGRPVNMP PMFPPPPPLP
601: QNANRAAKRD QRTADRNDRF GSGSEQGKSQ DMLSQSGGPD DDPQYQQGYK GNQDDHPDDS ESEDEAPRRS RHGEGKKKHK I
101: PVCRFFRLYG ECREQDCVYK HTNEDIKECN MYKLGFCPNG PDCRYRHAKS PGPPPPVEEV LQKIQHLYSY NYNSSNKFFQ QRGASYNQQA EKPLLPQGNN
201: STNQGVTGNP LPAELGNAQP QQQVQQSQQQ VNQSQMQNVA NGQPNQANRT ATPLPQGISR YFIVKSCNRE NLELSVQQGV WATQRSNESK LNEAFDSVEN
301: VILIFSVNRT RHFQGCAKMT SKIGGSVAGG NWKYAHGTAH YGRNFSVKWL KLCELSFHKT RHLRNPYNEN LPVKISRDCQ ELEPSIGEQL ASLLYLEPDS
401: ELMAISVAAE SKREEEKAKG VNPDNGGENP DIVPFEDNEE EEEEESDEEE ESFGHGVGPA GQGRGRGRGM MWPPHMPLGR GARPMPGMQG FNPVMMGDGL
501: SYGPVGPDGF GMPDLFGVGP RGFAPYGPRF SGDFGGPPAA MMFRGRPSQP GMFPGGGFGM MLNPGRGPFM GGIGVGGANP PRGGRPVNMP PMFPPPPPLP
601: QNANRAAKRD QRTADRNDRF GSGSEQGKSQ DMLSQSGGPD DDPQYQQGYK GNQDDHPDDS ESEDEAPRRS RHGEGKKKHK I
001: MEDADGLSFD FEGGLDSGPV QNTASVPVAP PENSSSAAVN VAPTYDHSSA TVAGAGRGRS FRQTVCRHWL RGLCMKGDAC GFLHQFDKAR MPICRFFRLY
101: GECREQDCVY KHTNEDIKEC NMYKLGFCPN GPDCRYRHAK LPGPPPPVEE VLQKIQQLTT YNYGTNRLYQ ARNVAPQLQD RPQGQVPMQG QPQESGNLQQ
201: QQQQQPQQSQ HQVSQTLIPN PADQTNRTSH PLPQGVNRYF VVKSNNRENF ELSVQQGVWA TQRSNEAKLN EAFDSVENVI LIFSVNRTRH FQGCAKMTSR
301: IGGYIGGGNW KHEHGTAQYG RNFSVKWLKL CELSFHKTRN LRNPYNENLP VKISRDCQEL EPSVGEQLAS LLYLEPDSEL MAISIAAEAK REEEKAKGVN
401: PESRAENPDI VPFEDNEEEE EEEDESEEEE ESMAGGPQGR GRGRGIMWPP QMPLGRGIRP MPGMGGFPLG VMGPGDAFPY GPGGYNGMPD PFGMGPRPFG
501: PYGPRFGGDF RGPVPGMMFP GRPPQQFPHG GYGMMGGGRG PHMGGMGNAP RGGRPMYYPP ATSSARPGPS NRKTPERSDE RGVSGDQQNQ DASHDMEQFE
601: VGNSLRNEES ESEDEDEAPR RSRHGEGKKR R
101: GECREQDCVY KHTNEDIKEC NMYKLGFCPN GPDCRYRHAK LPGPPPPVEE VLQKIQQLTT YNYGTNRLYQ ARNVAPQLQD RPQGQVPMQG QPQESGNLQQ
201: QQQQQPQQSQ HQVSQTLIPN PADQTNRTSH PLPQGVNRYF VVKSNNRENF ELSVQQGVWA TQRSNEAKLN EAFDSVENVI LIFSVNRTRH FQGCAKMTSR
301: IGGYIGGGNW KHEHGTAQYG RNFSVKWLKL CELSFHKTRN LRNPYNENLP VKISRDCQEL EPSVGEQLAS LLYLEPDSEL MAISIAAEAK REEEKAKGVN
401: PESRAENPDI VPFEDNEEEE EEEDESEEEE ESMAGGPQGR GRGRGIMWPP QMPLGRGIRP MPGMGGFPLG VMGPGDAFPY GPGGYNGMPD PFGMGPRPFG
501: PYGPRFGGDF RGPVPGMMFP GRPPQQFPHG GYGMMGGGRG PHMGGMGNAP RGGRPMYYPP ATSSARPGPS NRKTPERSDE RGVSGDQQNQ DASHDMEQFE
601: VGNSLRNEES ESEDEDEAPR RSRHGEGKKR R
Arabidopsis Description
CPSF3030-kDa cleavage and polyadenylation specificity factor 30 [Source:UniProtKB/Swiss-Prot;Acc:A9LNK9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.