CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG88461
KRH08941
KRH09220
KRH11760
KRH30256
KRH30262
KRH36762
KRH38460
KRH38714
KRH54731
KRH63183
KRH65727
KRH70353
KRH75969

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G23880.1	KRH11760	AT1G30460.1	16897494
AT5G23880.1	KRH36762	AT1G30460.1	16897494
AT5G23880.1	KRH11760	AT1G30460.1	18479511
AT5G23880.1	KRH36762	AT1G30460.1	18479511
AT5G23880.1	KRH70353	AT2G01730.1	16897494
AT5G23880.1	KRH70353	AT2G01730.1	18479511
AT5G23880.1	KRG88461	AT5G01400.1	17008405
AT5G23880.1	KRH65727	AT5G01400.1	17008405
AT5G23880.1	KRH75969	AT5G01400.1	17008405
AT5G23880.1	KRH08941	AT5G23880.1	16897494
AT5G23880.1	KRH30256	AT5G23880.1	16897494
AT5G23880.1	KRH30262	AT5G23880.1	16897494
AT5G23880.1	KRH38460	AT5G23880.1	16897494
AT5G23880.1	KRH09220	AT5G51660.1	16897494
AT5G23880.1	KRH38714	AT5G51660.1	16897494
AT5G23880.1	KRH09220	AT5G51660.1	17008405
AT5G23880.1	KRH38714	AT5G51660.1	17008405
AT5G23880.1	KRH09220	AT5G51660.1	18479511
AT5G23880.1	KRH38714	AT5G51660.1	18479511
AT5G23880.1	KRH54731	AT5G60940.1	18479511
AT5G23880.1	KRH63183	AT5G60940.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH08941	Soybean	cytosol, nucleus	97.43	97.56
KRH30256	Soybean	cytosol	88.5	96.75
VIT_16s0050g00590.t01	Wine grape	cytosol	84.03	83.92
KRH30262	Soybean	cytosol	61.03	80.97
Solyc03g025540.2.1	Tomato	nucleus	79.57	79.57
AT5G23880.1	Thale cress	cytosol	79.3	79.3
CDX80392	Canola	cytosol	77.94	77.94
Bra009712.1-P	Field mustard	cytosol	77.81	77.81
GSMUA_Achr1P15280_001	Banana	cytosol	77.27	77.69
CDX88053	Canola	cytosol	77.54	77.54
Os09t0569400-01	Rice	cytosol	74.7	74.8
EER93127	Sorghum	cytosol	73.61	73.71
TraesCS5D01G464200.1	Wheat	cytosol	72.26	72.36
TraesCS5B01G462500.2	Wheat	cytosol	72.26	72.26
TraesCS5A01G453700.5	Wheat	cytosol	71.99	71.99
Zm00001d044552_P006	Maize	cytosol, plasma membrane	72.8	70.23
HORVU5Hr1G109220.1	Barley	plastid	72.67	68.15
KRH70353	Soybean	cytosol	14.48	20.11
KRH44086	Soybean	cytosol	17.05	18.31
KRH26351	Soybean	nucleus	16.91	18.14

Protein Annotations

EntrezGene:100777002	MapMan:16.2.1.2.2	Gene3D:3.60.15.10	EMBL:ACUP02005817	InterPro:Beta_Casp	InterPro:CPSF2
InterPro:CPSF2_MBL	ncoils:Coil	InterPro:Cpsf2_C	EnsemblPlantsGene:GLYMA_09G136900	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005847	GO:GO:0006139	GO:GO:0006378	GO:GO:0006379	GO:GO:0006397
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	InterPro:IPR036866
UniProt:K7LDR8	EnsemblPlants:KRH38460	ProteinID:KRH38460	ProteinID:KRH38460.1	InterPro:Metallo-B-lactamas	PFAM:PF07521
PFAM:PF10996	PFAM:PF13299	PFAM:PF16661	PANTHER:PTHR11203	PANTHER:PTHR11203:SF5	InterPro:RMMBL
InterPro:RibonucZ/Hydroxyglut_hydro	SMART:SM01027	SUPFAM:SSF56281	UniParc:UPI000296C517	SEG:seg	:

Description

hypothetical protein

Coordinates

chr9:+:33874549..33894771

Molecular Weight (calculated)

81930.8 Da

IEP (calculated)

4.975

GRAVY (calculated)

-0.141

Length

739 amino acids

Sequence
(BLAST)

001: MGTSVQVTPL CGVYNENPLS YLVSIDGFNF LVDCGWNDHF DPSHLQPLAR VASTIDAVLL SHADTLHLGA LPYAMKRLGL SAPVYSTEPV YRLGLLTMYD
101: QYLSRKQVSE FDLFTLDDID SAFQSVTRLT YSQNHHFSGK GEGIVIAPHV AGHLLGGTIW KITKDGEDVI YAVDFNHRKE RHLNGTVLGS FVRPAVLITD
201: AYNALNNQPY RRQNDKEFGD ILKKTLRAGG NVLLPVDTVG RVLELILMLE LYWADENLNY PIYFLTYVAS STIDYVKSFL EWMSDTIAKS FEKTRENIFL
301: LKYVTLLINK TELDNAPDGP KVVLASMASL EAGFSHDIFV EWANDVKNLV LFTERGQFAT LARMLQADPP PKAVKVVVSK RVPLVGEELI AYEEEQNRIK
401: KEALKASLMK EEELKTSHGA DNDISDPMVI DSGNNHVPPE VTGPRGGGYR DIFIDGFVPP STSVAPIFPC YENTSEWDDF GEVINPDDYV IKDEDMDQTA
501: MHGGSDINGK LDEGAASLIL DTKPSKVVSD ERTVQVRCSL VYMDFEGRSD GRSIKNILSH VAPLKLVLVH GSAEATEHLK QHCLKHVCPH VYAPQIEETI
601: DVTSDLCAYK VQLSEKLMSN VLFKKLGDYE IAWVDAVVGK TENDPLSLLP VSGAAPPHKS VLVGDLKLAD IKQFLSSKGV QVEFAGGALR CGEYVTLRKV
701: GDASQKGGGS GAQQIVIEGP LCEDYYKIRD YLYSQFYLL

Best Arabidopsis Sequence Match ( AT5G23880.1 )
(BLAST)

001: MGTSVQVTPL CGVYNENPLS YLVSIDGFNF LIDCGWNDLF DTSLLEPLSR VASTIDAVLL SHPDTLHIGA LPYAMKQLGL SAPVYATEPV HRLGLLTMYD
101: QFLSRKQVSD FDLFTLDDID SAFQNVIRLT YSQNYHLSGK GEGIVIAPHV AGHMLGGSIW RITKDGEDVI YAVDYNHRKE RHLNGTVLQS FVRPAVLITD
201: AYHALYTNQT ARQQRDKEFL DTISKHLEVG GNVLLPVDTA GRVLELLLIL EQHWSQRGFS FPIYFLTYVS SSTIDYVKSF LEWMSDSISK SFETSRDNAF
301: LLRHVTLLIN KTDLDNAPPG PKVVLASMAS LEAGFAREIF VEWANDPRNL VLFTETGQFG TLARMLQSAP PPKFVKVTMS KRVPLAGEEL IAYEEEQNRL
401: KREEALRASL VKEEETKASH GSDDNSSEPM IIDTKTTHDV IGSHGPAYKD ILIDGFVPPS SSVAPMFPYY DNTSEWDDFG EIINPDDYVI KDEDMDRGAM
501: HNGGDVDGRL DEATASLMLD TRPSKVMSNE LIVTVSCSLV KMDYEGRSDG RSIKSMIAHV SPLKLVLVHA IAEATEHLKQ HCLNNICPHV YAPQIEETVD
601: VTSDLCAYKV QLSEKLMSNV IFKKLGDSEV AWVDSEVGKT ERDMRSLLPM PGAASPHKPV LVGDLKIADF KQFLSSKGVQ VEFAGGGALR CGEYVTLRKV
701: GPTGQKGGAS GPQQILIEGP LCEDYYKIRD YLYSQFYLL

Arabidopsis Description

CPSF100Cleavage and polyadenylation specificity factor subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKF9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.