Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G464200.1 | Wheat | cytosol | 99.19 | 99.32 |
| TraesCS5B01G462500.2 | Wheat | cytosol | 99.19 | 99.19 |
| HORVU5Hr1G109220.1 | Barley | plastid | 96.75 | 90.74 |
| Os09t0569400-01 | Rice | cytosol | 89.58 | 89.7 |
| EER93127 | Sorghum | cytosol | 87.82 | 87.94 |
| Zm00001d044552_P006 | Maize | cytosol, plasma membrane | 86.74 | 83.68 |
| GSMUA_Achr1P15280_001 | Banana | cytosol | 75.91 | 76.33 |
| VIT_16s0050g00590.t01 | Wine grape | cytosol | 73.48 | 73.38 |
| KRH38460 | Soybean | cytosol | 71.99 | 71.99 |
| KRH08941 | Soybean | cytosol, nucleus | 71.04 | 71.14 |
| CDX80392 | Canola | cytosol | 70.64 | 70.64 |
| Bra009712.1-P | Field mustard | cytosol | 70.64 | 70.64 |
| CDX88053 | Canola | cytosol | 70.5 | 70.5 |
| Solyc03g025540.2.1 | Tomato | nucleus | 69.69 | 69.69 |
| KRH30256 | Soybean | cytosol | 63.73 | 69.67 |
| AT5G23880.1 | Thale cress | cytosol | 69.55 | 69.55 |
| KRH30262 | Soybean | cytosol | 46.28 | 61.4 |
| TraesCS5A01G203800.1 | Wheat | cytosol | 14.88 | 19.93 |
| TraesCS4A01G324800.1 | Wheat | cytosol | 16.37 | 17.49 |
| TraesCS4A01G336600.1 | Wheat | cytosol | 14.07 | 17.28 |
| TraesCS5A01G358600.1 | Wheat | cytosol, plasma membrane, plastid | 14.88 | 16.44 |
Protein Annotations
| MapMan:16.2.1.2.2 | Gene3D:3.40.50.10890 | Gene3D:3.60.15.10 | InterPro:Beta_Casp | InterPro:CPSF2 | InterPro:CPSF2_MBL |
| ncoils:Coil | InterPro:Cpsf2_C | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0005737 | GO:GO:0005847 | GO:GO:0006139 | GO:GO:0006378 | GO:GO:0006379 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009506 | GO:GO:0009987 | GO:GO:0035194 | GO:GO:0040029 |
| InterPro:IPR036866 | InterPro:Metallo-B-lactamas | PFAM:PF07521 | PFAM:PF10996 | PFAM:PF13299 | PFAM:PF16661 |
| PANTHER:PTHR11203 | PANTHER:PTHR11203:SF5 | InterPro:RMMBL | InterPro:RibonucZ/Hydroxyglut_hydro | SMART:SM00849 | SMART:SM01027 |
| SUPFAM:SSF56281 | EnsemblPlantsGene:TraesCS5A01G453700 | EnsemblPlants:TraesCS5A01G453700.5 | TIGR:cd16293 | SEG:seg | : |
Description
No Description!
Coordinates
chr5A:-:635269921..635276435
Molecular Weight (calculated)
81607.9 Da
IEP (calculated)
5.128
GRAVY (calculated)
-0.082
Length
739 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTSVQVMPL SGAYGEGPLC YLLAVDGFRF LLDCGWTDHC DPALLQPLAR VAPTIDAVLL SHPDMMHLGA LPYAIKHLGL SAPVYATEPV FRLGLLTMYD
101: YFLSRWQVAD FDLFSLDDID AAFQNVVRLK YSQNHLLNAD KGEGIVIAPH VSGHLLGGTV WKITKDGEDV VYAVDFNHRK ERHLNGTTLG SFIRPAVLIT
201: DAYNALNNQV YKRQQDQDFI DSMVKVLSSG GSVLLPADTA GRVLELLLIM EQYWAQRHLV YPIYFLTNVS TSTVDFVKSF LEWMSDSISK SFEHTRDNAF
301: LLRHVSLIIN KEELEKLGDA PKVVLASMSS LEVGFSHDIF VEMANEAKNL VLFTEKGQFG TLARMLQVDP PPKAVKVTMS KRVPLVGDEL KAYEEEQERI
401: KKEEVLKASI SKEKELKASH ESNAKASDPM VVDASSSRKS SNAGSHVGGN VDILIDGFVS PVTSIAPMFP FFENTADWDD FGEVINPDDY MMKQDEMDNN
501: MMLGAGDGMD GKLDESSARL LLDSAPSKVI SNEMTVQVKC SLAYMDFEGR SDGRSVKSVI AHVAPLKLVL VHGSAEATEH LKMHCAKNSD LHVYAPQIEE
601: TIDVTSDLCA YKVQLSEKLM SNVISKKLGE HEIAWVDSGV GKVDEKLTLL PPSSTPAAHK SVLVGDLKLA DFKQFLANKG LQVEFAGGAL RCGEYITVRK
701: IGDSNQKGST GSQQIVVEGP LCEDYYKIRE LLYSQFFLL
101: YFLSRWQVAD FDLFSLDDID AAFQNVVRLK YSQNHLLNAD KGEGIVIAPH VSGHLLGGTV WKITKDGEDV VYAVDFNHRK ERHLNGTTLG SFIRPAVLIT
201: DAYNALNNQV YKRQQDQDFI DSMVKVLSSG GSVLLPADTA GRVLELLLIM EQYWAQRHLV YPIYFLTNVS TSTVDFVKSF LEWMSDSISK SFEHTRDNAF
301: LLRHVSLIIN KEELEKLGDA PKVVLASMSS LEVGFSHDIF VEMANEAKNL VLFTEKGQFG TLARMLQVDP PPKAVKVTMS KRVPLVGDEL KAYEEEQERI
401: KKEEVLKASI SKEKELKASH ESNAKASDPM VVDASSSRKS SNAGSHVGGN VDILIDGFVS PVTSIAPMFP FFENTADWDD FGEVINPDDY MMKQDEMDNN
501: MMLGAGDGMD GKLDESSARL LLDSAPSKVI SNEMTVQVKC SLAYMDFEGR SDGRSVKSVI AHVAPLKLVL VHGSAEATEH LKMHCAKNSD LHVYAPQIEE
601: TIDVTSDLCA YKVQLSEKLM SNVISKKLGE HEIAWVDSGV GKVDEKLTLL PPSSTPAAHK SVLVGDLKLA DFKQFLANKG LQVEFAGGAL RCGEYITVRK
701: IGDSNQKGST GSQQIVVEGP LCEDYYKIRE LLYSQFFLL
001: MGTSVQVTPL CGVYNENPLS YLVSIDGFNF LIDCGWNDLF DTSLLEPLSR VASTIDAVLL SHPDTLHIGA LPYAMKQLGL SAPVYATEPV HRLGLLTMYD
101: QFLSRKQVSD FDLFTLDDID SAFQNVIRLT YSQNYHLSGK GEGIVIAPHV AGHMLGGSIW RITKDGEDVI YAVDYNHRKE RHLNGTVLQS FVRPAVLITD
201: AYHALYTNQT ARQQRDKEFL DTISKHLEVG GNVLLPVDTA GRVLELLLIL EQHWSQRGFS FPIYFLTYVS SSTIDYVKSF LEWMSDSISK SFETSRDNAF
301: LLRHVTLLIN KTDLDNAPPG PKVVLASMAS LEAGFAREIF VEWANDPRNL VLFTETGQFG TLARMLQSAP PPKFVKVTMS KRVPLAGEEL IAYEEEQNRL
401: KREEALRASL VKEEETKASH GSDDNSSEPM IIDTKTTHDV IGSHGPAYKD ILIDGFVPPS SSVAPMFPYY DNTSEWDDFG EIINPDDYVI KDEDMDRGAM
501: HNGGDVDGRL DEATASLMLD TRPSKVMSNE LIVTVSCSLV KMDYEGRSDG RSIKSMIAHV SPLKLVLVHA IAEATEHLKQ HCLNNICPHV YAPQIEETVD
601: VTSDLCAYKV QLSEKLMSNV IFKKLGDSEV AWVDSEVGKT ERDMRSLLPM PGAASPHKPV LVGDLKIADF KQFLSSKGVQ VEFAGGGALR CGEYVTLRKV
701: GPTGQKGGAS GPQQILIEGP LCEDYYKIRD YLYSQFYLL
101: QFLSRKQVSD FDLFTLDDID SAFQNVIRLT YSQNYHLSGK GEGIVIAPHV AGHMLGGSIW RITKDGEDVI YAVDYNHRKE RHLNGTVLQS FVRPAVLITD
201: AYHALYTNQT ARQQRDKEFL DTISKHLEVG GNVLLPVDTA GRVLELLLIL EQHWSQRGFS FPIYFLTYVS SSTIDYVKSF LEWMSDSISK SFETSRDNAF
301: LLRHVTLLIN KTDLDNAPPG PKVVLASMAS LEAGFAREIF VEWANDPRNL VLFTETGQFG TLARMLQSAP PPKFVKVTMS KRVPLAGEEL IAYEEEQNRL
401: KREEALRASL VKEEETKASH GSDDNSSEPM IIDTKTTHDV IGSHGPAYKD ILIDGFVPPS SSVAPMFPYY DNTSEWDDFG EIINPDDYVI KDEDMDRGAM
501: HNGGDVDGRL DEATASLMLD TRPSKVMSNE LIVTVSCSLV KMDYEGRSDG RSIKSMIAHV SPLKLVLVHA IAEATEHLKQ HCLNNICPHV YAPQIEETVD
601: VTSDLCAYKV QLSEKLMSNV IFKKLGDSEV AWVDSEVGKT ERDMRSLLPM PGAASPHKPV LVGDLKIADF KQFLSSKGVQ VEFAGGGALR CGEYVTLRKV
701: GPTGQKGGAS GPQQILIEGP LCEDYYKIRD YLYSQFYLL
Arabidopsis Description
CPSF100Cleavage and polyadenylation specificity factor subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKF9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.