Factsheet for TraesCS5A01G392400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4B01G094500.1
TraesCS4D01G091300.1
TraesCS5A01G453700.5
TraesCS5B01G462500.2
TraesCS5D01G464200.1
TraesCS7A01G461800.1
TraesCS7B01G363200.2
TraesCS7D01G450100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60940.1	TraesCS7A01G461800.1	AT1G30460.1	18479511
AT5G60940.1	TraesCS7B01G363200.2	AT1G30460.1	18479511
AT5G60940.1	TraesCS7D01G450100.1	AT1G30460.1	18479511
AT5G60940.1	TraesCS4B01G094500.1	AT1G71800.1	18479511
AT5G60940.1	TraesCS4D01G091300.1	AT1G71800.1	18479511
AT5G60940.1	TraesCS5A01G453700.5	AT5G23880.1	18479511
AT5G60940.1	TraesCS5B01G462500.2	AT5G23880.1	18479511
AT5G60940.1	TraesCS5D01G464200.1	AT5G23880.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G397200.1	Wheat	cytosol	96.93	96.48
TraesCS5D01G402200.1	Wheat	cytosol	94.81	96.4
HORVU5Hr1G095960.3	Barley	cytosol	95.52	95.74
KXG37531	Sorghum	cytosol	81.37	81.56
Os03t0754900-02	Rice	cytosol	82.55	80.65
Zm00001d034054_P002	Maize	cytosol	79.72	75.62
GSMUA_Achr6P35010_001	Banana	cytosol	58.25	73.95
PGSC0003DMT400059810	Potato	cytosol	27.36	70.73
Solyc12g038540.1.1	Tomato	cytosol	10.38	67.69
KRH54731	Soybean	cytosol, nucleus	65.8	65.65
KRH63183	Soybean	cytosol	47.64	62.93
AT5G60940.1	Thale cress	cytosol	61.56	60.84
CDY58694	Canola	cytosol	60.85	59.58
CDY02182	Canola	cytosol	58.73	59.43
VIT_17s0000g05080.t01	Wine grape	cytosol	67.45	59.09
Bra012994.1-P	Field mustard	cytosol	58.49	55.48
Solyc12g038530.1.1	Tomato	cytosol	37.97	54.03
Solyc12g038550.1.1	Tomato	plastid	24.76	38.75

Protein Annotations

MapMan:16.2.1.3.3	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR44133	PANTHER:PTHR44133:SF1	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS5A01G392400	EnsemblPlants:TraesCS5A01G392400.1
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	TIGR:cd00200
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5A:+:588553972..588558777

Molecular Weight (calculated)

45957.2 Da

IEP (calculated)

8.043

GRAVY (calculated)

-0.267

Length

424 amino acids

Sequence
(BLAST)

001: MDAAVQEAKL LRQVNALIVA HLRDQNLTQA AAAVAAATMT PKADASVPNH LLRLVAKGLA AEREEAARGG GAPAAFDSGA GGGGLARPLG TNAVDFSVQN
101: VRGPSKTFPK HETRHISDHK NVARCAKFSP DGKYFATGSG DTSIKFFEVS KIKQTMLGDS KEGSGRPVVR TFYDHVQPIN DLDFHPISPI LISGAKDNTI
201: KFFDFSKTAA RKAFRVIQDT HNVRSVCFHP CGDYILAGTD HPVAHLYDVN TFTCFLSANP QDSSAAINQV RYSGTGSMYV TASKDGSLRI WDGVSAECIR
301: PIIGAHGSVE ATSAIFTKDE RYILSSGKDS CIKLWEVGTG RLVKQYPGGV NTQFRCQAAF NETEEFVLST DEQNNEVVIW DALTSERVAR LPSGHTGAPR
401: WLEHSPVEPV FVTCGNDRSV RFWK

Best Arabidopsis Sequence Match ( AT5G60940.1 )
(BLAST)

001: MGNSGDLEQA LQDGNIFRQL NALIVAHLRH HNLSQVASAV ASATMTPLNI EVPPNRLLEL VAKGLAAENN GTLRGVSSSV LLPSSYGSIT TPRTASIDFS
101: VNHAKGSSKT IPKHESKTLS EHKSVVRCAR FSPDGMFFAT GGADTSIKLF EVPKVKQMIS GDTQARPLIR TFYDHAEPIN DLDFHPRSTI LISSAKDNCI
201: KFFDFSKTTA KRAFKVFQDT HNVRSISFHP SGEFLLAGTD HPIPHLYDVN TYQCFLPSNF PDSGVSGAIN QVRYSSTGSI YITASKDGAI RLFDGVSAKC
301: VRSIGNAHGK SEVTSAVFTK DQRFVLSSGK DSTVKLWEIG SGRMVKEYLG AKRVKLRSQA IFNDTEEFVI SIDEASNEVV TWDARTADKV AKWPSNHNGA
401: PRWIEHSPVE SVFVTCGIDR SIRFWKESV

Arabidopsis Description

CSTF50Cleavage stimulation factor subunit 50 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4J2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.