Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G450100.1 | Wheat | nucleus | 99.69 | 99.69 |
| TraesCS7B01G363200.2 | Wheat | nucleus | 98.77 | 98.32 |
| HORVU7Hr1G106340.5 | Barley | cytosol | 95.54 | 95.69 |
| EER88812 | Sorghum | cytosol, nucleus, peroxisome | 84.46 | 85.12 |
| Zm00001d014378_P001 | Maize | cytosol, nucleus, peroxisome | 82.46 | 83.75 |
| Os06t0677700-00 | Rice | cytosol, nucleus, plasma membrane | 88.15 | 83.53 |
| Zm00001d036594_P001 | Maize | cytosol, nucleus, peroxisome | 79.54 | 79.91 |
| Zm00001d014379_P001 | Maize | nucleus | 29.08 | 76.83 |
| Zm00001d036595_P001 | Maize | nucleus | 29.38 | 76.1 |
| GSMUA_Achr6P19820_001 | Banana | nucleus | 65.85 | 61.85 |
| GSMUA_Achr9P30440_001 | Banana | nucleus | 60.0 | 59.36 |
| KRH36762 | Soybean | nucleus | 60.46 | 57.71 |
| VIT_10s0003g04600.t01 | Wine grape | nucleus | 59.69 | 57.65 |
| KRH11760 | Soybean | nucleus | 60.92 | 57.31 |
| CDX98205 | Canola | nucleus | 47.38 | 56.62 |
| AT1G30460.1 | Thale cress | nucleus | 54.46 | 56.1 |
| Solyc02g070240.2.1 | Tomato | nucleus | 57.54 | 55.74 |
| Bra014881.1-P | Field mustard | nucleus | 48.0 | 53.79 |
| Bra010767.1-P | Field mustard | nucleus | 51.69 | 53.33 |
| Solyc02g021760.2.1 | Tomato | nucleus | 55.85 | 52.69 |
| CDX77591 | Canola | nucleus | 48.0 | 52.44 |
| CDY12057 | Canola | cytosol, nucleus, peroxisome | 50.77 | 50.3 |
| TraesCS6A01G138900.1 | Wheat | nucleus | 9.38 | 20.61 |
Protein Annotations
| MapMan:16.2.1.2.5 | Gene3D:3.10.590.10 | Gene3D:4.10.1000.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004519 | GO:GO:0004521 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005516 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006378 | GO:GO:0006396 | GO:GO:0006950 |
| GO:GO:0006979 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008219 |
| GO:GO:0009719 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0031124 | GO:GO:0034052 | GO:GO:0043068 |
| GO:GO:0046872 | GO:GO:1900363 | GO:GO:2000031 | InterPro:IPR000571 | InterPro:IPR007275 | PFAM:PF04146 |
| PFscan:PS50103 | PFscan:PS50882 | PANTHER:PTHR12357 | PANTHER:PTHR12357:SF59 | SMART:SM00356 | SUPFAM:SSF90229 |
| EnsemblPlantsGene:TraesCS7A01G461800 | EnsemblPlants:TraesCS7A01G461800.1 | InterPro:YTH_domain | InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf | SEG:seg |
Description
No Description!
Coordinates
chr7A:-:657902193..657906810
Molecular Weight (calculated)
71317.5 Da
IEP (calculated)
6.832
GRAVY (calculated)
-0.973
Length
650 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDGDGGLSF DFEGGLDTGP AAGGLALSSA DAGATGGGGG GDGGGHGRGR GRGSYRQTVC RHWLRGLCMK GEACGFLHQF DKARMPVCRF FRDYGECREP
101: DCAYKHSYDD VKECNMYKMG FCPNGPNCRY KHVKLPGPPP PVEEVLAKIL QMRSSNFNKF NQHRNNNYNQ QGDRPRPPPG SGLPNQNSTD NASTMQPAAG
201: QQAQTMNQQP QQKQQQVQQQ QKPNTNDQVQ GVPNGSSNQP TRLATPLPQG SSRYFIVKSC NRENLEISVQ QGIWATQRSN EAKLNEAFES MDNVILIFSI
301: NRTRNFQGCA KMTSRIGGYI GGGNWKSANG TAHYGRNFSL QWLKLCELSF QKTHHLRNPY NDNLPVKISR DCQELEPFIG EQLASLLYLE PDSELTAMLV
401: AAEAKREEEK AKGVSADEAA DNQDIVLFED NEEEEEEESE EEDENNGQES QGRGRGRGMM WPPQMQMPRG PMMGPRGFPP NMMGDFGGGF GFGMPDPFGM
501: PRGFPPFGGP RFPGDFPRGP MPGMVFPGRP PQPGGMFPMG LEMMMGPGRG PLMGMGGPGR PNRPIGMAPF MPPPPPRPVK RDQRRPGGDN RGDRYETGSD
601: QGSRGHDNNA GNSGADGNRS QSGDRFGRSA FRDDDSESDE EAAPRRSRKR
101: DCAYKHSYDD VKECNMYKMG FCPNGPNCRY KHVKLPGPPP PVEEVLAKIL QMRSSNFNKF NQHRNNNYNQ QGDRPRPPPG SGLPNQNSTD NASTMQPAAG
201: QQAQTMNQQP QQKQQQVQQQ QKPNTNDQVQ GVPNGSSNQP TRLATPLPQG SSRYFIVKSC NRENLEISVQ QGIWATQRSN EAKLNEAFES MDNVILIFSI
301: NRTRNFQGCA KMTSRIGGYI GGGNWKSANG TAHYGRNFSL QWLKLCELSF QKTHHLRNPY NDNLPVKISR DCQELEPFIG EQLASLLYLE PDSELTAMLV
401: AAEAKREEEK AKGVSADEAA DNQDIVLFED NEEEEEEESE EEDENNGQES QGRGRGRGMM WPPQMQMPRG PMMGPRGFPP NMMGDFGGGF GFGMPDPFGM
501: PRGFPPFGGP RFPGDFPRGP MPGMVFPGRP PQPGGMFPMG LEMMMGPGRG PLMGMGGPGR PNRPIGMAPF MPPPPPRPVK RDQRRPGGDN RGDRYETGSD
601: QGSRGHDNNA GNSGADGNRS QSGDRFGRSA FRDDDSESDE EAAPRRSRKR
001: MEDADGLSFD FEGGLDSGPV QNTASVPVAP PENSSSAAVN VAPTYDHSSA TVAGAGRGRS FRQTVCRHWL RGLCMKGDAC GFLHQFDKAR MPICRFFRLY
101: GECREQDCVY KHTNEDIKEC NMYKLGFCPN GPDCRYRHAK LPGPPPPVEE VLQKIQQLTT YNYGTNRLYQ ARNVAPQLQD RPQGQVPMQG QPQESGNLQQ
201: QQQQQPQQSQ HQVSQTLIPN PADQTNRTSH PLPQGVNRYF VVKSNNRENF ELSVQQGVWA TQRSNEAKLN EAFDSVENVI LIFSVNRTRH FQGCAKMTSR
301: IGGYIGGGNW KHEHGTAQYG RNFSVKWLKL CELSFHKTRN LRNPYNENLP VKISRDCQEL EPSVGEQLAS LLYLEPDSEL MAISIAAEAK REEEKAKGVN
401: PESRAENPDI VPFEDNEEEE EEEDESEEEE ESMAGGPQGR GRGRGIMWPP QMPLGRGIRP MPGMGGFPLG VMGPGDAFPY GPGGYNGMPD PFGMGPRPFG
501: PYGPRFGGDF RGPVPGMMFP GRPPQQFPHG GYGMMGGGRG PHMGGMGNAP RGGRPMYYPP ATSSARPGPS NRKTPERSDE RGVSGDQQNQ DASHDMEQFE
601: VGNSLRNEES ESEDEDEAPR RSRHGEGKKR R
101: GECREQDCVY KHTNEDIKEC NMYKLGFCPN GPDCRYRHAK LPGPPPPVEE VLQKIQQLTT YNYGTNRLYQ ARNVAPQLQD RPQGQVPMQG QPQESGNLQQ
201: QQQQQPQQSQ HQVSQTLIPN PADQTNRTSH PLPQGVNRYF VVKSNNRENF ELSVQQGVWA TQRSNEAKLN EAFDSVENVI LIFSVNRTRH FQGCAKMTSR
301: IGGYIGGGNW KHEHGTAQYG RNFSVKWLKL CELSFHKTRN LRNPYNENLP VKISRDCQEL EPSVGEQLAS LLYLEPDSEL MAISIAAEAK REEEKAKGVN
401: PESRAENPDI VPFEDNEEEE EEEDESEEEE ESMAGGPQGR GRGRGIMWPP QMPLGRGIRP MPGMGGFPLG VMGPGDAFPY GPGGYNGMPD PFGMGPRPFG
501: PYGPRFGGDF RGPVPGMMFP GRPPQQFPHG GYGMMGGGRG PHMGGMGNAP RGGRPMYYPP ATSSARPGPS NRKTPERSDE RGVSGDQQNQ DASHDMEQFE
601: VGNSLRNEES ESEDEDEAPR RSRHGEGKKR R
Arabidopsis Description
CPSF3030-kDa cleavage and polyadenylation specificity factor 30 [Source:UniProtKB/Swiss-Prot;Acc:A9LNK9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.