Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G074500.1 | Wheat | cytosol | 96.93 | 97.61 |
| TraesCS2A01G061100.3 | Wheat | nucleus | 96.79 | 96.45 |
| HORVU2Hr1G011580.28 | Barley | nucleus | 94.97 | 95.3 |
| Zm00001d004153_P002 | Maize | nucleus | 14.87 | 82.88 |
| KXG25932 | Sorghum | cytosol | 82.47 | 82.01 |
| GSMUA_Achr11P... | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 31.35 | 73.73 |
| Os04t0252200-01 | Rice | cytosol, nucleus, plasma membrane | 12.15 | 72.2 |
| VIT_16s0022g01860.t01 | Wine grape | cytosol, nucleus, plastid | 66.13 | 67.21 |
| KRH09220 | Soybean | nucleus | 67.25 | 66.55 |
| KRH38714 | Soybean | nucleus | 66.76 | 65.98 |
| GSMUA_Achr11P... | Banana | cytosol, plasma membrane, plastid | 24.23 | 64.74 |
| CDY46934 | Canola | cytosol | 65.29 | 64.57 |
| Bra022557.1-P | Field mustard | cytosol | 65.15 | 64.43 |
| CDX91600 | Canola | cytosol | 64.87 | 64.16 |
| AT5G51660.1 | Thale cress | cytosol | 64.59 | 64.15 |
| Solyc03g007100.2.1 | Tomato | nucleus | 63.83 | 64.14 |
| GSMUA_Achr11P... | Banana | cytosol | 9.71 | 61.78 |
| KRH04684 | Soybean | extracellular | 3.07 | 41.9 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G060100.3 | EnsemblPlantsGene:TraesCS2D01G060100 | Gene3D:2.130.10.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:Cleavage/polyA-sp_fac_asu_C |
| InterPro:IPR015943 | InterPro:WD40/YVTN_repeat-like_dom_sf | PANTHER:PTHR10644 | PANTHER:PTHR10644:SF2 | PFAM:PF03178 | PFAM:PF10433 |
| SEG:seg | MapMan:16.2.1.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr2D:+:24963512..24981956
Molecular Weight (calculated)
156786.0 Da
IEP (calculated)
6.165
GRAVY (calculated)
-0.064
Length
1432 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSYAAYKMKH WPTGIEHCAA GFITHRPSDA AAFSAPAAGP AASSSGADSD ADSSAAAARR RLGPTPNLVV AAANVLEVYA VRAEAAPAAE DGAGGASAAF
0101: DGILGARLEL VCHYRLHGNI ESMAVLSDGA ENRRDSIALA FRDAKITCLE FDDAIHGLRT SSMHCFEGPE WQHLKRGRES FAWGPVIKSD PLGRCGAALI
0201: YGLQMAILKA AQVGQSLVGE DEPTRALSSS AVRVESSYLI DLRALETNHV KDFTFVHGYI EPVLVILHER EPTWAGRISS KHHTCMISAF SISMTLKQHP
0301: VIWSAANLPH DAYQILSVPP PIGGVLVVCA NSIHYHSQST SCSLALNNFS SQPDGSPEIP KINFHVELDA AKATWLSNDI VMFSTKTGEM LLLTVVYDGR
0401: TVRRLDLMKS KASVISSGAT TIGSSFFFLG SRLGDSLLVQ YSCGVATSAL PDLIDERSGD IDGDLPFSKR LKRVPSDILQ DVTSVEELSF QNNMLPNSTE
0501: SAQKISYVVR DKLINVGPLK DFSYGLRVNA DANATGNAKQ SNYELVCCSG HGKNGSLSVL QQSIRPDLIT EVELPSCRGI WTVYYKSSRA HTTEDNEYHA
0601: YLIISLEGRT MVLETGDDLG EVTETVDYYV QGATIAAGNL FGRRRVIQVY ASGARVLDGS FMTQELNFTA HSSESSSSSS EPLGVASASI ADPYVLLKMV
0701: DGTIQLLVGD HSTCALSISV PSIFTSLSEK ISACTLYRDR GPEPWLRKTR SDAWLSSGIA EPVDGGGSSS QEQSDIYCII CYESGKLEIF EVPSFRCVFS
0801: VESFLSGEAL LVDAKGRQDD TKVSLKKEAA DSIRVVELAM HRWSGQFSRP FLFGLLNDGT FLCYHAYCYE GLESNVKDNS FSPAGSVDLA SASDSRLKNL
0901: RFRRISVDIT LREDISSLAR PRITIFNNVG GYEGLFLSGT RPVWVMVCRQ RFRVHPQLCD GPIEAFTVLH NVNCCHGLIY VTSQGFLKIC QLPEAYNYDN
1001: YWPVQKIPLH GTPHQVTYYA EQSLYPLIVS VPVVRPLNQV LSIMADQDLV HHMDNDATSA DDLQKTYTVE EFEVRVLELE KPSGRWETRS TIPMQSFENA
1101: LTVRIVTLHN TTTKENETLM AIGTAYVQGE DVAARGRVLL FSFTKSENSQ NLVTEVYSKE SKGAVSAVAS LQGHLLIAAG PKITLSKWTG SELTAVAFYD
1201: APLHVVSLNI VKNFVLFGDI HKSVYFLSWK EQGSQLTLLA KDFGSLDCFA TEFLIDGSTL NLAVSDSDKN LQIFYYAPKM VESWKGQKLL SRAEFHVGAH
1301: LTKFMRLQML PAPGLASEKT NRFALLFGTL DGGIGCIAPI DELTFRRLQS LQRKLVDAVP HVCGLNPRSF RQFKSNGKAH RPGPDNIIDF ELLAHYEMLS
1401: LEEQLDIAQQ IGTTRAQILS NFADISLGTS FL
0101: DGILGARLEL VCHYRLHGNI ESMAVLSDGA ENRRDSIALA FRDAKITCLE FDDAIHGLRT SSMHCFEGPE WQHLKRGRES FAWGPVIKSD PLGRCGAALI
0201: YGLQMAILKA AQVGQSLVGE DEPTRALSSS AVRVESSYLI DLRALETNHV KDFTFVHGYI EPVLVILHER EPTWAGRISS KHHTCMISAF SISMTLKQHP
0301: VIWSAANLPH DAYQILSVPP PIGGVLVVCA NSIHYHSQST SCSLALNNFS SQPDGSPEIP KINFHVELDA AKATWLSNDI VMFSTKTGEM LLLTVVYDGR
0401: TVRRLDLMKS KASVISSGAT TIGSSFFFLG SRLGDSLLVQ YSCGVATSAL PDLIDERSGD IDGDLPFSKR LKRVPSDILQ DVTSVEELSF QNNMLPNSTE
0501: SAQKISYVVR DKLINVGPLK DFSYGLRVNA DANATGNAKQ SNYELVCCSG HGKNGSLSVL QQSIRPDLIT EVELPSCRGI WTVYYKSSRA HTTEDNEYHA
0601: YLIISLEGRT MVLETGDDLG EVTETVDYYV QGATIAAGNL FGRRRVIQVY ASGARVLDGS FMTQELNFTA HSSESSSSSS EPLGVASASI ADPYVLLKMV
0701: DGTIQLLVGD HSTCALSISV PSIFTSLSEK ISACTLYRDR GPEPWLRKTR SDAWLSSGIA EPVDGGGSSS QEQSDIYCII CYESGKLEIF EVPSFRCVFS
0801: VESFLSGEAL LVDAKGRQDD TKVSLKKEAA DSIRVVELAM HRWSGQFSRP FLFGLLNDGT FLCYHAYCYE GLESNVKDNS FSPAGSVDLA SASDSRLKNL
0901: RFRRISVDIT LREDISSLAR PRITIFNNVG GYEGLFLSGT RPVWVMVCRQ RFRVHPQLCD GPIEAFTVLH NVNCCHGLIY VTSQGFLKIC QLPEAYNYDN
1001: YWPVQKIPLH GTPHQVTYYA EQSLYPLIVS VPVVRPLNQV LSIMADQDLV HHMDNDATSA DDLQKTYTVE EFEVRVLELE KPSGRWETRS TIPMQSFENA
1101: LTVRIVTLHN TTTKENETLM AIGTAYVQGE DVAARGRVLL FSFTKSENSQ NLVTEVYSKE SKGAVSAVAS LQGHLLIAAG PKITLSKWTG SELTAVAFYD
1201: APLHVVSLNI VKNFVLFGDI HKSVYFLSWK EQGSQLTLLA KDFGSLDCFA TEFLIDGSTL NLAVSDSDKN LQIFYYAPKM VESWKGQKLL SRAEFHVGAH
1301: LTKFMRLQML PAPGLASEKT NRFALLFGTL DGGIGCIAPI DELTFRRLQS LQRKLVDAVP HVCGLNPRSF RQFKSNGKAH RPGPDNIIDF ELLAHYEMLS
1401: LEEQLDIAQQ IGTTRAQILS NFADISLGTS FL
0001: MSFAAYKMMH WPTGVENCAS GYITHSLSDS TLQIPIVSVH DDIEAEWPNP KRGIGPLPNV VITAANILEV YIVRAQEEGN TQELRNPKLA KRGGVMDGVY
0101: GVSLELVCHY RLHGNVESIA VLPMGGGNSS KGRDSIILTF RDAKISVLEF DDSIHSLRMT SMHCFEGPDW LHLKRGRESF PRGPLVKVDP QGRCGGVLVY
0201: GLQMIILKTS QVGSGLVGDD DAFSSGGTVS ARVESSYIIN LRDLEMKHVK DFVFLHGYIE PVIVILQEEE HTWAGRVSWK HHTCVLSALS INSTLKQHPV
0301: IWSAINLPHD AYKLLAVPSP IGGVLVLCAN TIHYHSQSAS CALALNNYAS SADSSQELPA SNFSVELDAA HGTWISNDVA LLSTKSGELL LLTLIYDGRA
0401: VQRLDLSKSK ASVLASDITS VGNSLFFLGS RLGDSLLVQF SCRSGPAASL PGLRDEDEDI EGEGHQAKRL RMTSDTFQDT IGNEELSLFG STPNNSDSAQ
0501: KSFSFAVRDS LVNVGPVKDF AYGLRINADA NATGVSKQSN YELVCCSGHG KNGALCVLRQ SIRPEMITEV ELPGCKGIWT VYHKSSRGHN ADSSKMAADE
0601: DEYHAYLIIS LEARTMVLET ADLLTEVTES VDYYVQGRTI AAGNLFGRRR VIQVFEHGAR ILDGSFMNQE LSFGASNSES NSGSESSTVS SVSIADPYVL
0701: LRMTDDSIRL LVGDPSTCTV SISSPSVLEG SKRKISACTL YHDKGPEPWL RKASTDAWLS SGVGEAVDSV DGGPQDQGDI YCVVCYESGA LEIFDVPSFN
0801: CVFSVDKFAS GRRHLSDMPI HELEYELNKN SEDNTSSKEI KNTRVVELAM QRWSGHHTRP FLFAVLADGT ILCYHAYLFD GVDSTKAENS LSSENPAALN
0901: SSGSSKLRNL KFLRIPLDTS TREGTSDGVA SQRITMFKNI SGHQGFFLSG SRPGWCMLFR ERLRFHSQLC DGSIAAFTVL HNVNCNHGFI YVTAQGVLKI
1001: CQLPSASIYD NYWPVQKIPL KATPHQVTYY AEKNLYPLIV SYPVSKPLNQ VLSSLVDQEA GQQLDNHNMS SDDLQRTYTV EEFEIQILEP ERSGGPWETK
1101: AKIPMQTSEH ALTVRVVTLL NASTGENETL LAVGTAYVQG EDVAARGRVL LFSFGKNGDN SQNVVTEVYS RELKGAISAV ASIQGHLLIS SGPKIILHKW
1201: NGTELNGVAF FDAPPLYVVS MNVVKSFILL GDVHKSIYFL SWKEQGSQLS LLAKDFESLD CFATEFLIDG STLSLAVSDE QKNIQVFYYA PKMIESWKGL
1301: KLLSRAEFHV GAHVSKFLRL QMVSSGADKI NRFALLFGTL DGSFGCIAPL DEVTFRRLQS LQKKLVDAVP HVAGLNPLAF RQFRSSGKAR RSGPDSIVDC
1401: ELLCHYEMLP LEEQLELAHQ IGTTRYSILK DLVDLSVGTS FL
0101: GVSLELVCHY RLHGNVESIA VLPMGGGNSS KGRDSIILTF RDAKISVLEF DDSIHSLRMT SMHCFEGPDW LHLKRGRESF PRGPLVKVDP QGRCGGVLVY
0201: GLQMIILKTS QVGSGLVGDD DAFSSGGTVS ARVESSYIIN LRDLEMKHVK DFVFLHGYIE PVIVILQEEE HTWAGRVSWK HHTCVLSALS INSTLKQHPV
0301: IWSAINLPHD AYKLLAVPSP IGGVLVLCAN TIHYHSQSAS CALALNNYAS SADSSQELPA SNFSVELDAA HGTWISNDVA LLSTKSGELL LLTLIYDGRA
0401: VQRLDLSKSK ASVLASDITS VGNSLFFLGS RLGDSLLVQF SCRSGPAASL PGLRDEDEDI EGEGHQAKRL RMTSDTFQDT IGNEELSLFG STPNNSDSAQ
0501: KSFSFAVRDS LVNVGPVKDF AYGLRINADA NATGVSKQSN YELVCCSGHG KNGALCVLRQ SIRPEMITEV ELPGCKGIWT VYHKSSRGHN ADSSKMAADE
0601: DEYHAYLIIS LEARTMVLET ADLLTEVTES VDYYVQGRTI AAGNLFGRRR VIQVFEHGAR ILDGSFMNQE LSFGASNSES NSGSESSTVS SVSIADPYVL
0701: LRMTDDSIRL LVGDPSTCTV SISSPSVLEG SKRKISACTL YHDKGPEPWL RKASTDAWLS SGVGEAVDSV DGGPQDQGDI YCVVCYESGA LEIFDVPSFN
0801: CVFSVDKFAS GRRHLSDMPI HELEYELNKN SEDNTSSKEI KNTRVVELAM QRWSGHHTRP FLFAVLADGT ILCYHAYLFD GVDSTKAENS LSSENPAALN
0901: SSGSSKLRNL KFLRIPLDTS TREGTSDGVA SQRITMFKNI SGHQGFFLSG SRPGWCMLFR ERLRFHSQLC DGSIAAFTVL HNVNCNHGFI YVTAQGVLKI
1001: CQLPSASIYD NYWPVQKIPL KATPHQVTYY AEKNLYPLIV SYPVSKPLNQ VLSSLVDQEA GQQLDNHNMS SDDLQRTYTV EEFEIQILEP ERSGGPWETK
1101: AKIPMQTSEH ALTVRVVTLL NASTGENETL LAVGTAYVQG EDVAARGRVL LFSFGKNGDN SQNVVTEVYS RELKGAISAV ASIQGHLLIS SGPKIILHKW
1201: NGTELNGVAF FDAPPLYVVS MNVVKSFILL GDVHKSIYFL SWKEQGSQLS LLAKDFESLD CFATEFLIDG STLSLAVSDE QKNIQVFYYA PKMIESWKGL
1301: KLLSRAEFHV GAHVSKFLRL QMVSSGADKI NRFALLFGTL DGSFGCIAPL DEVTFRRLQS LQKKLVDAVP HVAGLNPLAF RQFRSSGKAR RSGPDSIVDC
1401: ELLCHYEMLP LEEQLELAHQ IGTTRYSILK DLVDLSVGTS FL
Arabidopsis Description
CPSF160Cleavage and polyadenylation specificity factor subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGR0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.