Factsheet for GSMUA_Achr11P16620_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, plastid, cytosol, plasma membrane, golgi, nucleus

Predictor Summary:

plastid 2
mitochondrion 3
nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus, plastid, secretory
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P15280_001
GSMUA_Achr6P19820_001
GSMUA_Achr8P29920_001
GSMUA_Achr9P30440_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51660.1	GSMUA_Achr6P19820_001	AT1G30460.1	16897494
AT5G51660.1	GSMUA_Achr9P30440_001	AT1G30460.1	16897494
AT5G51660.1	GSMUA_Achr6P19820_001	AT1G30460.1	18479511
AT5G51660.1	GSMUA_Achr9P30440_001	AT1G30460.1	18479511
AT5G51660.1	GSMUA_Achr8P29920_001	AT3G06560.1	16897494
AT5G51660.1	GSMUA_Achr1P15280_001	AT5G23880.1	16897494
AT5G51660.1	GSMUA_Achr1P15280_001	AT5G23880.1	18479511
AT5G51660.1	GSMUA_Achr11P...	AT5G51660.1	16897494
AT5G51660.1	GSMUA_Achr11P...	AT5G51660.1	16897494
AT5G51660.1	GSMUA_Achr11P...	AT5G51660.1	16897494

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d004153_P002	Maize	nucleus	31.03	73.54
VIT_16s0022g01860.t01	Wine grape	cytosol, nucleus, plastid	75.7	32.72
KRH38714	Soybean	nucleus	77.67	32.64
KRH09220	Soybean	nucleus	77.34	32.55
TraesCS2B01G074500.1	Wheat	cytosol	73.23	31.36
TraesCS2D01G060100.3	Wheat	cytosol, nucleus, plastid	73.73	31.35
KXG25932	Sorghum	cytosol	74.06	31.32
HORVU2Hr1G011580.28	Barley	nucleus	73.23	31.25
TraesCS2A01G061100.3	Wheat	nucleus	73.23	31.04
Solyc03g007100.2.1	Tomato	nucleus	72.09	30.81
CDY46934	Canola	cytosol	71.43	30.04
AT5G51660.1	Thale cress	cytosol	71.1	30.03
Bra022557.1-P	Field mustard	cytosol	71.26	29.97
CDX91600	Canola	cytosol	71.26	29.97
Zm00001d004154_P002	Maize	plasma membrane	37.11	18.6
KRH04684	Soybean	extracellular	1.15	6.67
Os04t0252200-01	Rice	cytosol, nucleus, plasma membrane	1.15	2.9
GSMUA_Achr11P...	Banana	cytosol	0.66	1.78
GSMUA_Achr11P...	Banana	cytosol, plasma membrane, plastid	0.66	0.75

Protein Annotations

EnsemblPlants:GSMUA_Achr11P16620_001	EnsemblPlants:GSMUA_Achr11T16620_001	EnsemblPlantsGene:GSMUA_Achr11G16620_001	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
InterPro:Cleavage/polyA-sp_fac_asu_C	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	PANTHER:PTHR10644	PANTHER:PTHR10644:SF2	PFAM:PF03178
SEG:seg	UniParc:UPI000295661D	UniProt:M0RSU2	MapMan:16.2.1.2.1	:	:

Description

Probable cleavage and polyadenylation specificity factor subunit 1 [Source:GMGC_GENE;Acc:GSMUA_Achr11G16620_001]

Coordinates

chr11:+:18332143..18337526

Molecular Weight (calculated)

67983.4 Da

IEP (calculated)

7.413

GRAVY (calculated)

-0.131

Length

609 amino acids

Sequence
(BLAST)

001: MKIVELAMQR WSGQYSRPFL FGILSDGTML CYHAYLYEGL ENTPKVEDAV SPHRSAEMGN VSASRLHNLR FIRVAVDTAT SEEASNIVSR PRITVFKNVG
101: GYQGLFLSGS RPAWFMVCRE RLRVHPQLCD GSIVAFTVLH NVNCNHGLIY VTSQGYLKIC QLPAVCNYDN YWPVQKVPLR GTPHQVTYYS EKNLYPLIVS
201: VPVVKPLSQV LSSLVDQDTV HLSDNDSVNS DDLQKIYTVD EFEIRILESG KSGGHWETRA TIPMQTSENA LTVRVVTLFN TTTRENETLL SVGTAYVQGE
301: DVAARGRMLL YSFGKNTENA QNLVSEVYSK ELKGAVSALA SLQGHLLVAS GPKITLHKWT GTELNGIAFY DAPLHVVSLN IVKNFVLLGD IHKSIYFLNW
401: KEQGAQLSLL AKDFGSLDCY ATEFLIDGST LSLVVSDDDK NIQIFYYAPK TLESWKGQKL LPRAEFHAGT HVTKFLRLQM LSSSFDRANT APGSDKTNRF
501: ALLFSTLDGS IGCIAPLDEL TFRRLQTLQR KLVDAVPHTC GLNPRSFRQF RSNGKAHRPG PDNMVDCELL SQYEMLPLDK QLEIAFQIGT TRSQILSNLN
601: DLSLGTSFL

Best Arabidopsis Sequence Match ( AT5G51660.1 )
(BLAST)

0001: MSFAAYKMMH WPTGVENCAS GYITHSLSDS TLQIPIVSVH DDIEAEWPNP KRGIGPLPNV VITAANILEV YIVRAQEEGN TQELRNPKLA KRGGVMDGVY
0101: GVSLELVCHY RLHGNVESIA VLPMGGGNSS KGRDSIILTF RDAKISVLEF DDSIHSLRMT SMHCFEGPDW LHLKRGRESF PRGPLVKVDP QGRCGGVLVY
0201: GLQMIILKTS QVGSGLVGDD DAFSSGGTVS ARVESSYIIN LRDLEMKHVK DFVFLHGYIE PVIVILQEEE HTWAGRVSWK HHTCVLSALS INSTLKQHPV
0301: IWSAINLPHD AYKLLAVPSP IGGVLVLCAN TIHYHSQSAS CALALNNYAS SADSSQELPA SNFSVELDAA HGTWISNDVA LLSTKSGELL LLTLIYDGRA
0401: VQRLDLSKSK ASVLASDITS VGNSLFFLGS RLGDSLLVQF SCRSGPAASL PGLRDEDEDI EGEGHQAKRL RMTSDTFQDT IGNEELSLFG STPNNSDSAQ
0501: KSFSFAVRDS LVNVGPVKDF AYGLRINADA NATGVSKQSN YELVCCSGHG KNGALCVLRQ SIRPEMITEV ELPGCKGIWT VYHKSSRGHN ADSSKMAADE
0601: DEYHAYLIIS LEARTMVLET ADLLTEVTES VDYYVQGRTI AAGNLFGRRR VIQVFEHGAR ILDGSFMNQE LSFGASNSES NSGSESSTVS SVSIADPYVL
0701: LRMTDDSIRL LVGDPSTCTV SISSPSVLEG SKRKISACTL YHDKGPEPWL RKASTDAWLS SGVGEAVDSV DGGPQDQGDI YCVVCYESGA LEIFDVPSFN
0801: CVFSVDKFAS GRRHLSDMPI HELEYELNKN SEDNTSSKEI KNTRVVELAM QRWSGHHTRP FLFAVLADGT ILCYHAYLFD GVDSTKAENS LSSENPAALN
0901: SSGSSKLRNL KFLRIPLDTS TREGTSDGVA SQRITMFKNI SGHQGFFLSG SRPGWCMLFR ERLRFHSQLC DGSIAAFTVL HNVNCNHGFI YVTAQGVLKI
1001: CQLPSASIYD NYWPVQKIPL KATPHQVTYY AEKNLYPLIV SYPVSKPLNQ VLSSLVDQEA GQQLDNHNMS SDDLQRTYTV EEFEIQILEP ERSGGPWETK
1101: AKIPMQTSEH ALTVRVVTLL NASTGENETL LAVGTAYVQG EDVAARGRVL LFSFGKNGDN SQNVVTEVYS RELKGAISAV ASIQGHLLIS SGPKIILHKW
1201: NGTELNGVAF FDAPPLYVVS MNVVKSFILL GDVHKSIYFL SWKEQGSQLS LLAKDFESLD CFATEFLIDG STLSLAVSDE QKNIQVFYYA PKMIESWKGL
1301: KLLSRAEFHV GAHVSKFLRL QMVSSGADKI NRFALLFGTL DGSFGCIAPL DEVTFRRLQS LQKKLVDAVP HVAGLNPLAF RQFRSSGKAR RSGPDSIVDC
1401: ELLCHYEMLP LEEQLELAHQ IGTTRYSILK DLVDLSVGTS FL

Arabidopsis Description

CPSF160Cleavage and polyadenylation specificity factor subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGR0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.