Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G074500.1 | Wheat | cytosol | 96.8 | 97.82 |
| TraesCS2D01G060100.3 | Wheat | cytosol, nucleus, plastid | 96.45 | 96.79 |
| HORVU2Hr1G011580.28 | Barley | nucleus | 94.43 | 95.09 |
| Zm00001d004153_P002 | Maize | nucleus | 14.68 | 82.1 |
| KXG25932 | Sorghum | cytosol | 81.84 | 81.67 |
| Os04t0252200-01 | Rice | cytosol, nucleus, plasma membrane | 12.39 | 73.86 |
| GSMUA_Achr11P... | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 31.04 | 73.23 |
| VIT_16s0022g01860.t01 | Wine grape | cytosol, nucleus, plastid | 65.62 | 66.93 |
| KRH09220 | Soybean | nucleus | 66.88 | 66.41 |
| KRH38714 | Soybean | nucleus | 66.46 | 65.91 |
| GSMUA_Achr11P... | Banana | cytosol, plasma membrane, plastid | 24.15 | 64.74 |
| CDY46934 | Canola | cytosol | 64.65 | 64.16 |
| Bra022557.1-P | Field mustard | cytosol | 64.51 | 64.02 |
| Solyc03g007100.2.1 | Tomato | nucleus | 63.4 | 63.93 |
| AT5G51660.1 | Thale cress | cytosol | 64.09 | 63.87 |
| CDX91600 | Canola | cytosol | 64.23 | 63.74 |
| GSMUA_Achr11P... | Banana | cytosol | 9.6 | 61.33 |
| KRH04684 | Soybean | extracellular | 3.06 | 41.9 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G061100.3 | EnsemblPlantsGene:TraesCS2A01G061100 | Gene3D:2.130.10.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:Cleavage/polyA-sp_fac_asu_C |
| InterPro:IPR015943 | InterPro:WD40/YVTN_repeat-like_dom_sf | PANTHER:PTHR10644 | PANTHER:PTHR10644:SF2 | PFAM:PF03178 | PFAM:PF10433 |
| SEG:seg | MapMan:16.2.1.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr2A:+:27427715..27450084
Molecular Weight (calculated)
157617.0 Da
IEP (calculated)
6.127
GRAVY (calculated)
-0.068
Length
1437 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSYAAYKMKH WPTGIEHCAA GFITHCPSDA AAFSALAPGP AASSSGAESD ADSSAAARRP RRLGPTPNLV VAAANVLEVY AVRAEAAPAE DGAGAPPASA
0101: SAAAFDGILG ARLELVCHYR LHGNVESMAV LSDGAENRRD SIALAFRDAK ITCLEFDDAI HGLRTSSMHC FEGPEWQHLK RGRESFAWGP VIKSDPLGRC
0201: GAALIYGLQM AILKAAQVGQ SLVGEDEPTR ALSSSAVRVE SSYLIDLRAL ETNHVKDFTF VHGYIEPVLV ILHEREPTWA GRISSKHHTC MISAFSISMT
0301: LKQHPVIWSA ANLPHDAYQI LSVPPPISGV LVVCANSIHY HSQSTSCSLA LNNFSSQPDG SPEIPKLNFH VELDAAKATW LSNDIVMFST KTGEMLLLTV
0401: VYDGRTVRRL DLMKSKASVI SSGATTIGSS FFFLGSRLGD SLLVQFSCGV ATSVLPDLID ERSGDIEGDL PFPKRLKRVP SDVLQDVTSV EELSFQNNML
0501: PNSIESAQKI SYVVRDKLIN VGPLKDFSYG LRVNADANAT GNAKQSNYEL VCCSGHGKNG ALSVLQQSIR PDLITEVELP SCRGIWTVYY KSSRAHTTED
0601: NEYHAYLIIS LENRTMVLET GDDLGEVTET VDYYVQGATI AAGNLFGRRR VIQVYAMGAR VLDGSFMTQE LNFTAHSSES SSSSSEPLGV ASASVADPYV
0701: LLKMVDGTIQ LLVGDHSTCA LSISVPSSFT SSSEKISACT LYRDRGPEPW LRKTRSDAWL SSGIVEPIDG SGSSSQEQSD IYCIICYESG KLEIFEVPSF
0801: RCVFSLESFF SGEALLVDSK RRHDDTKISL KKEAADSIQV VELAMHRWSG QFSRPFLFGL LNDGTFLCYH AFCYEDSESN VKDNSFSPAG SVDLASASDS
0901: RLKNLRFHRI SVDITLREDI SSLARPRITI FNNVGGYEGL FLSGTRPVWV MVCRQRFRVH PQLCDGPIEA FTVLHNVNCC HGLIYVTSQG FLKICQLPEA
1001: YNYDNYWPVQ KIPLHGTPHQ VTYYAEQSLY PLIVSVPVVR PLNQVLSIMA DQDLVHHMDN DATSADDLQK TYTVEEFEVR VLELEKPSGR WETRSTIPMQ
1101: SFENALTVRI VTLHNTTTKE NETLMAIGTA YVQGEDVAAR GRVLLFSFTK SENSQNLVTE VYSKESKGAV SAVASLQGHL LIAAGPKITL SKWTGSELTA
1201: VAFYDAPLHV VSLNIVKNFV LFGDIHKSVY FLSWKEQGSQ LTLLAKDFGS LDCFATEFLI DGSTLNLAVS DSDKNLQIFY YAPKMVESWK GQKLLSRAEF
1301: HVGAHLTKFM RLQMLPSPGL ASEKTNRFAL LFGTLDGGIG CIAPIDELTF RRLQSLQRKL VDAVPHVCGL NPRSFRQFKS NGKAHHPGPD NVIDFELLAH
1401: YEMLSLEEQL DIAQQIGTTR AQILSNFADI SLGTSFL
0101: SAAAFDGILG ARLELVCHYR LHGNVESMAV LSDGAENRRD SIALAFRDAK ITCLEFDDAI HGLRTSSMHC FEGPEWQHLK RGRESFAWGP VIKSDPLGRC
0201: GAALIYGLQM AILKAAQVGQ SLVGEDEPTR ALSSSAVRVE SSYLIDLRAL ETNHVKDFTF VHGYIEPVLV ILHEREPTWA GRISSKHHTC MISAFSISMT
0301: LKQHPVIWSA ANLPHDAYQI LSVPPPISGV LVVCANSIHY HSQSTSCSLA LNNFSSQPDG SPEIPKLNFH VELDAAKATW LSNDIVMFST KTGEMLLLTV
0401: VYDGRTVRRL DLMKSKASVI SSGATTIGSS FFFLGSRLGD SLLVQFSCGV ATSVLPDLID ERSGDIEGDL PFPKRLKRVP SDVLQDVTSV EELSFQNNML
0501: PNSIESAQKI SYVVRDKLIN VGPLKDFSYG LRVNADANAT GNAKQSNYEL VCCSGHGKNG ALSVLQQSIR PDLITEVELP SCRGIWTVYY KSSRAHTTED
0601: NEYHAYLIIS LENRTMVLET GDDLGEVTET VDYYVQGATI AAGNLFGRRR VIQVYAMGAR VLDGSFMTQE LNFTAHSSES SSSSSEPLGV ASASVADPYV
0701: LLKMVDGTIQ LLVGDHSTCA LSISVPSSFT SSSEKISACT LYRDRGPEPW LRKTRSDAWL SSGIVEPIDG SGSSSQEQSD IYCIICYESG KLEIFEVPSF
0801: RCVFSLESFF SGEALLVDSK RRHDDTKISL KKEAADSIQV VELAMHRWSG QFSRPFLFGL LNDGTFLCYH AFCYEDSESN VKDNSFSPAG SVDLASASDS
0901: RLKNLRFHRI SVDITLREDI SSLARPRITI FNNVGGYEGL FLSGTRPVWV MVCRQRFRVH PQLCDGPIEA FTVLHNVNCC HGLIYVTSQG FLKICQLPEA
1001: YNYDNYWPVQ KIPLHGTPHQ VTYYAEQSLY PLIVSVPVVR PLNQVLSIMA DQDLVHHMDN DATSADDLQK TYTVEEFEVR VLELEKPSGR WETRSTIPMQ
1101: SFENALTVRI VTLHNTTTKE NETLMAIGTA YVQGEDVAAR GRVLLFSFTK SENSQNLVTE VYSKESKGAV SAVASLQGHL LIAAGPKITL SKWTGSELTA
1201: VAFYDAPLHV VSLNIVKNFV LFGDIHKSVY FLSWKEQGSQ LTLLAKDFGS LDCFATEFLI DGSTLNLAVS DSDKNLQIFY YAPKMVESWK GQKLLSRAEF
1301: HVGAHLTKFM RLQMLPSPGL ASEKTNRFAL LFGTLDGGIG CIAPIDELTF RRLQSLQRKL VDAVPHVCGL NPRSFRQFKS NGKAHHPGPD NVIDFELLAH
1401: YEMLSLEEQL DIAQQIGTTR AQILSNFADI SLGTSFL
0001: MSFAAYKMMH WPTGVENCAS GYITHSLSDS TLQIPIVSVH DDIEAEWPNP KRGIGPLPNV VITAANILEV YIVRAQEEGN TQELRNPKLA KRGGVMDGVY
0101: GVSLELVCHY RLHGNVESIA VLPMGGGNSS KGRDSIILTF RDAKISVLEF DDSIHSLRMT SMHCFEGPDW LHLKRGRESF PRGPLVKVDP QGRCGGVLVY
0201: GLQMIILKTS QVGSGLVGDD DAFSSGGTVS ARVESSYIIN LRDLEMKHVK DFVFLHGYIE PVIVILQEEE HTWAGRVSWK HHTCVLSALS INSTLKQHPV
0301: IWSAINLPHD AYKLLAVPSP IGGVLVLCAN TIHYHSQSAS CALALNNYAS SADSSQELPA SNFSVELDAA HGTWISNDVA LLSTKSGELL LLTLIYDGRA
0401: VQRLDLSKSK ASVLASDITS VGNSLFFLGS RLGDSLLVQF SCRSGPAASL PGLRDEDEDI EGEGHQAKRL RMTSDTFQDT IGNEELSLFG STPNNSDSAQ
0501: KSFSFAVRDS LVNVGPVKDF AYGLRINADA NATGVSKQSN YELVCCSGHG KNGALCVLRQ SIRPEMITEV ELPGCKGIWT VYHKSSRGHN ADSSKMAADE
0601: DEYHAYLIIS LEARTMVLET ADLLTEVTES VDYYVQGRTI AAGNLFGRRR VIQVFEHGAR ILDGSFMNQE LSFGASNSES NSGSESSTVS SVSIADPYVL
0701: LRMTDDSIRL LVGDPSTCTV SISSPSVLEG SKRKISACTL YHDKGPEPWL RKASTDAWLS SGVGEAVDSV DGGPQDQGDI YCVVCYESGA LEIFDVPSFN
0801: CVFSVDKFAS GRRHLSDMPI HELEYELNKN SEDNTSSKEI KNTRVVELAM QRWSGHHTRP FLFAVLADGT ILCYHAYLFD GVDSTKAENS LSSENPAALN
0901: SSGSSKLRNL KFLRIPLDTS TREGTSDGVA SQRITMFKNI SGHQGFFLSG SRPGWCMLFR ERLRFHSQLC DGSIAAFTVL HNVNCNHGFI YVTAQGVLKI
1001: CQLPSASIYD NYWPVQKIPL KATPHQVTYY AEKNLYPLIV SYPVSKPLNQ VLSSLVDQEA GQQLDNHNMS SDDLQRTYTV EEFEIQILEP ERSGGPWETK
1101: AKIPMQTSEH ALTVRVVTLL NASTGENETL LAVGTAYVQG EDVAARGRVL LFSFGKNGDN SQNVVTEVYS RELKGAISAV ASIQGHLLIS SGPKIILHKW
1201: NGTELNGVAF FDAPPLYVVS MNVVKSFILL GDVHKSIYFL SWKEQGSQLS LLAKDFESLD CFATEFLIDG STLSLAVSDE QKNIQVFYYA PKMIESWKGL
1301: KLLSRAEFHV GAHVSKFLRL QMVSSGADKI NRFALLFGTL DGSFGCIAPL DEVTFRRLQS LQKKLVDAVP HVAGLNPLAF RQFRSSGKAR RSGPDSIVDC
1401: ELLCHYEMLP LEEQLELAHQ IGTTRYSILK DLVDLSVGTS FL
0101: GVSLELVCHY RLHGNVESIA VLPMGGGNSS KGRDSIILTF RDAKISVLEF DDSIHSLRMT SMHCFEGPDW LHLKRGRESF PRGPLVKVDP QGRCGGVLVY
0201: GLQMIILKTS QVGSGLVGDD DAFSSGGTVS ARVESSYIIN LRDLEMKHVK DFVFLHGYIE PVIVILQEEE HTWAGRVSWK HHTCVLSALS INSTLKQHPV
0301: IWSAINLPHD AYKLLAVPSP IGGVLVLCAN TIHYHSQSAS CALALNNYAS SADSSQELPA SNFSVELDAA HGTWISNDVA LLSTKSGELL LLTLIYDGRA
0401: VQRLDLSKSK ASVLASDITS VGNSLFFLGS RLGDSLLVQF SCRSGPAASL PGLRDEDEDI EGEGHQAKRL RMTSDTFQDT IGNEELSLFG STPNNSDSAQ
0501: KSFSFAVRDS LVNVGPVKDF AYGLRINADA NATGVSKQSN YELVCCSGHG KNGALCVLRQ SIRPEMITEV ELPGCKGIWT VYHKSSRGHN ADSSKMAADE
0601: DEYHAYLIIS LEARTMVLET ADLLTEVTES VDYYVQGRTI AAGNLFGRRR VIQVFEHGAR ILDGSFMNQE LSFGASNSES NSGSESSTVS SVSIADPYVL
0701: LRMTDDSIRL LVGDPSTCTV SISSPSVLEG SKRKISACTL YHDKGPEPWL RKASTDAWLS SGVGEAVDSV DGGPQDQGDI YCVVCYESGA LEIFDVPSFN
0801: CVFSVDKFAS GRRHLSDMPI HELEYELNKN SEDNTSSKEI KNTRVVELAM QRWSGHHTRP FLFAVLADGT ILCYHAYLFD GVDSTKAENS LSSENPAALN
0901: SSGSSKLRNL KFLRIPLDTS TREGTSDGVA SQRITMFKNI SGHQGFFLSG SRPGWCMLFR ERLRFHSQLC DGSIAAFTVL HNVNCNHGFI YVTAQGVLKI
1001: CQLPSASIYD NYWPVQKIPL KATPHQVTYY AEKNLYPLIV SYPVSKPLNQ VLSSLVDQEA GQQLDNHNMS SDDLQRTYTV EEFEIQILEP ERSGGPWETK
1101: AKIPMQTSEH ALTVRVVTLL NASTGENETL LAVGTAYVQG EDVAARGRVL LFSFGKNGDN SQNVVTEVYS RELKGAISAV ASIQGHLLIS SGPKIILHKW
1201: NGTELNGVAF FDAPPLYVVS MNVVKSFILL GDVHKSIYFL SWKEQGSQLS LLAKDFESLD CFATEFLIDG STLSLAVSDE QKNIQVFYYA PKMIESWKGL
1301: KLLSRAEFHV GAHVSKFLRL QMVSSGADKI NRFALLFGTL DGSFGCIAPL DEVTFRRLQS LQKKLVDAVP HVAGLNPLAF RQFRSSGKAR RSGPDSIVDC
1401: ELLCHYEMLP LEEQLELAHQ IGTTRYSILK DLVDLSVGTS FL
Arabidopsis Description
CPSF160Cleavage and polyadenylation specificity factor subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGR0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.