Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- plastid 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d004154_P002 | Maize | plasma membrane | 75.07 | 88.97 |
| TraesCS2B01G074500.1 | Wheat | cytosol | 81.94 | 82.98 |
| TraesCS2D01G060100.3 | Wheat | cytosol, nucleus, plastid | 82.01 | 82.47 |
| TraesCS2A01G061100.3 | Wheat | nucleus | 81.67 | 81.84 |
| HORVU2Hr1G011580.28 | Barley | nucleus | 80.56 | 81.29 |
| GSMUA_Achr11P... | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 31.32 | 74.06 |
| Os04t0252200-01 | Rice | cytosol, nucleus, plasma membrane | 11.88 | 70.95 |
| KRH09220 | Soybean | nucleus | 67.22 | 66.9 |
| VIT_16s0022g01860.t01 | Wine grape | cytosol, nucleus, plastid | 64.79 | 66.22 |
| KRH38714 | Soybean | nucleus | 66.53 | 66.11 |
| GSMUA_Achr11P... | Banana | cytosol, plasma membrane, plastid | 23.68 | 63.62 |
| Solyc03g007100.2.1 | Tomato | nucleus | 62.92 | 63.58 |
| CDY46934 | Canola | cytosol | 63.61 | 63.26 |
| Bra022557.1-P | Field mustard | cytosol | 63.4 | 63.05 |
| CDX91600 | Canola | cytosol | 63.26 | 62.91 |
| AT5G51660.1 | Thale cress | cytosol | 62.71 | 62.62 |
| GSMUA_Achr11P... | Banana | cytosol | 8.96 | 57.33 |
| KRH04684 | Soybean | extracellular | 3.06 | 41.9 |
Protein Annotations
| MapMan:16.2.1.2.1 | Gene3D:2.130.10.10 | UniProt:A0A1B6PJS7 | InterPro:Cleavage/polyA-sp_fac_asu_C | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | InterPro:IPR015943 | EnsemblPlants:KXG25932 | ProteinID:KXG25932 |
| ProteinID:KXG25932.2 | PFAM:PF03178 | PFAM:PF10433 | PANTHER:PTHR10644 | PANTHER:PTHR10644:SF2 | EnsemblPlantsGene:SORBI_3006G033101 |
| UniParc:UPI000B425562 | InterPro:WD40/YVTN_repeat-like_dom_sf | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr6:-:7734133..7780414
Molecular Weight (calculated)
157822.0 Da
IEP (calculated)
6.119
GRAVY (calculated)
-0.050
Length
1440 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSYAAYKMMH WPTSIDHCAA GFITHSPADA AAFSSAAPAA AASGPDGDID SAAASAPRRV GPTPNLVVSA ANVLEVYAVR ADSATGAEDV GNSSSTGAIL
0101: DGISGARLEL VCHYRLHGNI ESMAVLSDGT ENRRDSIAVT FKDAKIACME FDDSTNGLRT SSMHCFEGPE WFHLKRGRES FAWGPIIKAD PQGRCGAVLV
0201: YGLQMIILKA AEVGQSLVGE DEPTRMLSST AVRIESSYVI DLRDLEMNHI KDFTFVHGYI EPVLVILHER EPTWAGRISS KSQTCMLSAF SISMGLKQHP
0301: MIWSAAKLPH DAYQLLAVPP PISGILVICA NSIHYHSQST SCSLALNSFS SQPDGSPEIL KTSFHVELDV AKATWLSHDI VMFSSKNGEI LLLTVVYDGR
0401: AVQRLDLMKS KASVLSSGAT TLGSSFFFLG SRLADSLLVQ FSCGVPTSVL PDLTDESADI EGDLPFSKRL KRIPSDVLQD VTSVEELSFH NKTVPNIVDS
0501: AQKISFVVRD ALINVGPLKD FAYGLRTNSD PNATGIAKQS NYELVCCSGH GKNGTLSALQ QSIRPDLITE VELPSCTGIW TVYYKSSRGN TADNNEYHAY
0601: LIISLESRTM VLQTGDDLGE VTETVDYNVQ ASTIAAGNLF GRRRVIQVYA KGARVLDGSF MTQELNFSMH TSESSLSSEP LAAASASIAD PYVLLKMGDG
0701: SIRLLIGDHS TCTISINAPA ICASSSERIS SCTLYCDRGP EPWLRKTRTD AWISTGIGEV TDVNDNSSHD LSDIYCIICY ESGKLEIFEV PSFKCVFSVD
0801: NFVSGPSILF DAFSHISTKG SGIGDRDATK VSVKKEEATS IKIVELAMHR WSGQFSRPFL FGLLNDGTLL CYHAYYYESS ESNVQCAPSS PHGLPDIGNA
0901: TDSRLRNLRF RRVSIDISSR DDISCLVRPR ITIFNNVGGY EGLFLGGPRP TWIFVCRQRF RVHPQLCDGP IVAFTVLHNV NCCRGLIYVT SQGFLKICQL
1001: PSAYNYDNYW PVQKVPLHGT PHQVTYYAEQ SLYPLIVSVP QVRPLNQVLS SMADQELGLH IENDVTSGDD LQKVYTVDEF EVRIMELGKP SGHWETRFTI
1101: PMQSFENALT VRIVTLQNTS TKENETLMAI GTAYVQGEDV AARGRVLLYS FSRSENSQNL VTEVYSKESK GAVSAVASLQ GHLLIASGPK ITLNKWTGSE
1201: LTAVAFYDAP LHVVSLNIVK NFVLFGDIHK SIYFLSWKEQ GSQLNLLAKD FGSLDCFATE FLIDGSTLSL VVSDSDKNVQ IFYYAPKMVE SWKGQKLLSR
1301: AEFHVGAHVS KFLRLQMLPT QGLASEKTNR FALVFGTLDG GIGCIAPVDE LTFRRLQSLQ RKLVDAVPHV CGLNPRSFRH FKSNGKAHRP GPDNIIDFEL
1401: LSHYEMLSLE EQLEIAQQIG TTRSQILSNF SDFLLGTSFL
0101: DGISGARLEL VCHYRLHGNI ESMAVLSDGT ENRRDSIAVT FKDAKIACME FDDSTNGLRT SSMHCFEGPE WFHLKRGRES FAWGPIIKAD PQGRCGAVLV
0201: YGLQMIILKA AEVGQSLVGE DEPTRMLSST AVRIESSYVI DLRDLEMNHI KDFTFVHGYI EPVLVILHER EPTWAGRISS KSQTCMLSAF SISMGLKQHP
0301: MIWSAAKLPH DAYQLLAVPP PISGILVICA NSIHYHSQST SCSLALNSFS SQPDGSPEIL KTSFHVELDV AKATWLSHDI VMFSSKNGEI LLLTVVYDGR
0401: AVQRLDLMKS KASVLSSGAT TLGSSFFFLG SRLADSLLVQ FSCGVPTSVL PDLTDESADI EGDLPFSKRL KRIPSDVLQD VTSVEELSFH NKTVPNIVDS
0501: AQKISFVVRD ALINVGPLKD FAYGLRTNSD PNATGIAKQS NYELVCCSGH GKNGTLSALQ QSIRPDLITE VELPSCTGIW TVYYKSSRGN TADNNEYHAY
0601: LIISLESRTM VLQTGDDLGE VTETVDYNVQ ASTIAAGNLF GRRRVIQVYA KGARVLDGSF MTQELNFSMH TSESSLSSEP LAAASASIAD PYVLLKMGDG
0701: SIRLLIGDHS TCTISINAPA ICASSSERIS SCTLYCDRGP EPWLRKTRTD AWISTGIGEV TDVNDNSSHD LSDIYCIICY ESGKLEIFEV PSFKCVFSVD
0801: NFVSGPSILF DAFSHISTKG SGIGDRDATK VSVKKEEATS IKIVELAMHR WSGQFSRPFL FGLLNDGTLL CYHAYYYESS ESNVQCAPSS PHGLPDIGNA
0901: TDSRLRNLRF RRVSIDISSR DDISCLVRPR ITIFNNVGGY EGLFLGGPRP TWIFVCRQRF RVHPQLCDGP IVAFTVLHNV NCCRGLIYVT SQGFLKICQL
1001: PSAYNYDNYW PVQKVPLHGT PHQVTYYAEQ SLYPLIVSVP QVRPLNQVLS SMADQELGLH IENDVTSGDD LQKVYTVDEF EVRIMELGKP SGHWETRFTI
1101: PMQSFENALT VRIVTLQNTS TKENETLMAI GTAYVQGEDV AARGRVLLYS FSRSENSQNL VTEVYSKESK GAVSAVASLQ GHLLIASGPK ITLNKWTGSE
1201: LTAVAFYDAP LHVVSLNIVK NFVLFGDIHK SIYFLSWKEQ GSQLNLLAKD FGSLDCFATE FLIDGSTLSL VVSDSDKNVQ IFYYAPKMVE SWKGQKLLSR
1301: AEFHVGAHVS KFLRLQMLPT QGLASEKTNR FALVFGTLDG GIGCIAPVDE LTFRRLQSLQ RKLVDAVPHV CGLNPRSFRH FKSNGKAHRP GPDNIIDFEL
1401: LSHYEMLSLE EQLEIAQQIG TTRSQILSNF SDFLLGTSFL
0001: MSFAAYKMMH WPTGVENCAS GYITHSLSDS TLQIPIVSVH DDIEAEWPNP KRGIGPLPNV VITAANILEV YIVRAQEEGN TQELRNPKLA KRGGVMDGVY
0101: GVSLELVCHY RLHGNVESIA VLPMGGGNSS KGRDSIILTF RDAKISVLEF DDSIHSLRMT SMHCFEGPDW LHLKRGRESF PRGPLVKVDP QGRCGGVLVY
0201: GLQMIILKTS QVGSGLVGDD DAFSSGGTVS ARVESSYIIN LRDLEMKHVK DFVFLHGYIE PVIVILQEEE HTWAGRVSWK HHTCVLSALS INSTLKQHPV
0301: IWSAINLPHD AYKLLAVPSP IGGVLVLCAN TIHYHSQSAS CALALNNYAS SADSSQELPA SNFSVELDAA HGTWISNDVA LLSTKSGELL LLTLIYDGRA
0401: VQRLDLSKSK ASVLASDITS VGNSLFFLGS RLGDSLLVQF SCRSGPAASL PGLRDEDEDI EGEGHQAKRL RMTSDTFQDT IGNEELSLFG STPNNSDSAQ
0501: KSFSFAVRDS LVNVGPVKDF AYGLRINADA NATGVSKQSN YELVCCSGHG KNGALCVLRQ SIRPEMITEV ELPGCKGIWT VYHKSSRGHN ADSSKMAADE
0601: DEYHAYLIIS LEARTMVLET ADLLTEVTES VDYYVQGRTI AAGNLFGRRR VIQVFEHGAR ILDGSFMNQE LSFGASNSES NSGSESSTVS SVSIADPYVL
0701: LRMTDDSIRL LVGDPSTCTV SISSPSVLEG SKRKISACTL YHDKGPEPWL RKASTDAWLS SGVGEAVDSV DGGPQDQGDI YCVVCYESGA LEIFDVPSFN
0801: CVFSVDKFAS GRRHLSDMPI HELEYELNKN SEDNTSSKEI KNTRVVELAM QRWSGHHTRP FLFAVLADGT ILCYHAYLFD GVDSTKAENS LSSENPAALN
0901: SSGSSKLRNL KFLRIPLDTS TREGTSDGVA SQRITMFKNI SGHQGFFLSG SRPGWCMLFR ERLRFHSQLC DGSIAAFTVL HNVNCNHGFI YVTAQGVLKI
1001: CQLPSASIYD NYWPVQKIPL KATPHQVTYY AEKNLYPLIV SYPVSKPLNQ VLSSLVDQEA GQQLDNHNMS SDDLQRTYTV EEFEIQILEP ERSGGPWETK
1101: AKIPMQTSEH ALTVRVVTLL NASTGENETL LAVGTAYVQG EDVAARGRVL LFSFGKNGDN SQNVVTEVYS RELKGAISAV ASIQGHLLIS SGPKIILHKW
1201: NGTELNGVAF FDAPPLYVVS MNVVKSFILL GDVHKSIYFL SWKEQGSQLS LLAKDFESLD CFATEFLIDG STLSLAVSDE QKNIQVFYYA PKMIESWKGL
1301: KLLSRAEFHV GAHVSKFLRL QMVSSGADKI NRFALLFGTL DGSFGCIAPL DEVTFRRLQS LQKKLVDAVP HVAGLNPLAF RQFRSSGKAR RSGPDSIVDC
1401: ELLCHYEMLP LEEQLELAHQ IGTTRYSILK DLVDLSVGTS FL
0101: GVSLELVCHY RLHGNVESIA VLPMGGGNSS KGRDSIILTF RDAKISVLEF DDSIHSLRMT SMHCFEGPDW LHLKRGRESF PRGPLVKVDP QGRCGGVLVY
0201: GLQMIILKTS QVGSGLVGDD DAFSSGGTVS ARVESSYIIN LRDLEMKHVK DFVFLHGYIE PVIVILQEEE HTWAGRVSWK HHTCVLSALS INSTLKQHPV
0301: IWSAINLPHD AYKLLAVPSP IGGVLVLCAN TIHYHSQSAS CALALNNYAS SADSSQELPA SNFSVELDAA HGTWISNDVA LLSTKSGELL LLTLIYDGRA
0401: VQRLDLSKSK ASVLASDITS VGNSLFFLGS RLGDSLLVQF SCRSGPAASL PGLRDEDEDI EGEGHQAKRL RMTSDTFQDT IGNEELSLFG STPNNSDSAQ
0501: KSFSFAVRDS LVNVGPVKDF AYGLRINADA NATGVSKQSN YELVCCSGHG KNGALCVLRQ SIRPEMITEV ELPGCKGIWT VYHKSSRGHN ADSSKMAADE
0601: DEYHAYLIIS LEARTMVLET ADLLTEVTES VDYYVQGRTI AAGNLFGRRR VIQVFEHGAR ILDGSFMNQE LSFGASNSES NSGSESSTVS SVSIADPYVL
0701: LRMTDDSIRL LVGDPSTCTV SISSPSVLEG SKRKISACTL YHDKGPEPWL RKASTDAWLS SGVGEAVDSV DGGPQDQGDI YCVVCYESGA LEIFDVPSFN
0801: CVFSVDKFAS GRRHLSDMPI HELEYELNKN SEDNTSSKEI KNTRVVELAM QRWSGHHTRP FLFAVLADGT ILCYHAYLFD GVDSTKAENS LSSENPAALN
0901: SSGSSKLRNL KFLRIPLDTS TREGTSDGVA SQRITMFKNI SGHQGFFLSG SRPGWCMLFR ERLRFHSQLC DGSIAAFTVL HNVNCNHGFI YVTAQGVLKI
1001: CQLPSASIYD NYWPVQKIPL KATPHQVTYY AEKNLYPLIV SYPVSKPLNQ VLSSLVDQEA GQQLDNHNMS SDDLQRTYTV EEFEIQILEP ERSGGPWETK
1101: AKIPMQTSEH ALTVRVVTLL NASTGENETL LAVGTAYVQG EDVAARGRVL LFSFGKNGDN SQNVVTEVYS RELKGAISAV ASIQGHLLIS SGPKIILHKW
1201: NGTELNGVAF FDAPPLYVVS MNVVKSFILL GDVHKSIYFL SWKEQGSQLS LLAKDFESLD CFATEFLIDG STLSLAVSDE QKNIQVFYYA PKMIESWKGL
1301: KLLSRAEFHV GAHVSKFLRL QMVSSGADKI NRFALLFGTL DGSFGCIAPL DEVTFRRLQS LQKKLVDAVP HVAGLNPLAF RQFRSSGKAR RSGPDSIVDC
1401: ELLCHYEMLP LEEQLELAHQ IGTTRYSILK DLVDLSVGTS FL
Arabidopsis Description
CPSF160Cleavage and polyadenylation specificity factor subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGR0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.