Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G060100.3 | Wheat | cytosol, nucleus, plastid | 97.61 | 96.93 |
| TraesCS2A01G061100.3 | Wheat | nucleus | 97.82 | 96.8 |
| HORVU2Hr1G011580.28 | Barley | nucleus | 95.43 | 95.09 |
| Zm00001d004153_P002 | Maize | nucleus | 14.98 | 82.88 |
| KXG25932 | Sorghum | cytosol | 82.98 | 81.94 |
| GSMUA_Achr11P... | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 31.36 | 73.23 |
| Os04t0252200-01 | Rice | cytosol, nucleus, plasma membrane | 11.74 | 69.29 |
| VIT_16s0022g01860.t01 | Wine grape | cytosol, nucleus, plastid | 66.46 | 67.07 |
| KRH09220 | Soybean | nucleus | 67.65 | 66.48 |
| KRH38714 | Soybean | nucleus | 67.02 | 65.77 |
| GSMUA_Achr11P... | Banana | cytosol, plasma membrane, plastid | 24.47 | 64.93 |
| CDY46934 | Canola | cytosol | 65.33 | 64.16 |
| Bra022557.1-P | Field mustard | cytosol | 65.19 | 64.02 |
| AT5G51660.1 | Thale cress | cytosol | 64.84 | 63.94 |
| Solyc03g007100.2.1 | Tomato | nucleus | 63.99 | 63.86 |
| CDX91600 | Canola | cytosol | 64.91 | 63.74 |
| GSMUA_Achr11P... | Banana | cytosol | 9.7 | 61.33 |
| KRH04684 | Soybean | extracellular | 3.09 | 41.9 |
Protein Annotations
| MapMan:16.2.1.2.1 | Gene3D:2.130.10.10 | InterPro:Cleavage/polyA-sp_fac_asu_C | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:IPR015943 |
| PFAM:PF03178 | PFAM:PF10433 | PANTHER:PTHR10644 | PANTHER:PTHR10644:SF2 | EnsemblPlantsGene:TraesCS2B01G074500 | EnsemblPlants:TraesCS2B01G074500.1 |
| InterPro:WD40/YVTN_repeat-like_dom_sf | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr2B:+:40433508..40453756
Molecular Weight (calculated)
156073.0 Da
IEP (calculated)
6.097
GRAVY (calculated)
-0.065
Length
1422 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSYAAYKMKH WPTGIEHCAA GFIAHRPSDA AAFPAPAAGP AASSGADSDA DSSSARRRGP TPTLVVAAAN VLEVYAVRAE AAPAAEDGAA FDGVLGARLE
0101: LVCHYRLHGN VESMAVLSDG AENRRDSIAL AFRDTKITCL EFDDAIHGLR TSSMHCFEGP EWQHLKRGRE SFAWGPVIKS DPLGRCGAAL IYGLQMAILK
0201: AAQVGQSLVG EDEPTRALSS SAVRVESSYL IDLRALETNH VKDFTFVHGY IEPVLVILHE REPTWAGRIS SKHHTCMISA FSISMTLKQH PVIWSAANLP
0301: HDAYQILSVP PPISGVLVVC ANSIHYHSQS TSCSLALNSF SSQPDGSPEI PKLNFHVELD AAKATWLSND IVMFSTKTGE MLLLTVVYDG RTVRRLDLMK
0401: SKASVISSGA TTIGSSFFFL GSRLGDSLLV QFSCGVATSV LPDLIDERSG DIEGDLPFPK RLKRVPSDVL QDVTSVEELS FQNNMLPNSI ESAQKISYVV
0501: RDKLINVGPL KDFSYGLRVN ADANATGNAK QSNYELVCCS GHGKNGALSV LQQSIRPDLI TEVELPSCRG IWTVYYKSSR AHTSEDNEYH AYLIISLESR
0601: TMVLETGDDL GEVTETVDYY VQGATIAAGN LFGRRRVIQV YATGARVLDG SFMTQELNFT AHSSESSSSS SEPLGVASAS IADPYVLLKM VDGTVQLLVG
0701: DHSTCALSIS VPSIFTSSSE KISACTLYCD RGPEPWLRKT RSDAWLSSGI AEPIDGSGSS SQEQSDIYCI ICYESGKLEI FEVPSFRCVF SVESFFSGEA
0801: LLVDSKGRHD DTKVSLKKEA DSIRVVELAM HRWSGQFSRP FLFGLLNDGT FLCYHAFCYE DSESNVKDNS FSPAGSVDLA SASDSRLKNL RFHRISVDIT
0901: LREDISSLAR PRITIFNNVG GYEGLFLSGT RPVWVMVCRQ RFRVHPQLCD GPIEAFTVLH NVNCCHGLIY VTSQGFLKIC QLPEAYNYDN YWPVQKIPLH
1001: GTPHQVTYYA EQSLYPLIVS VPVVRPLNQV LSIMADQDLV HHMDNDATSA DDLQKTYTVE EFEVRVLELE KPSGRWETRS TIPMQSFENA LTVRIVTLHN
1101: TTTKENETLM AIGTAYVQGE DVAARGRVLL FSFTKSENSQ NLVTEVYSKE SKGAVSAVAS LQGHLLIAAG PKITLSKWTG SELTAVAFYD APLHVVSLNI
1201: VKNFVLFGDI HKSVYFLSWK EQGSQLTLLA KDFGSLDCFA TEFLIDGSTL NLAVSDSDKN LQIFYYAPKM VESWKGQKLL SRAEFHVGAH LTKFMRLQML
1301: PAPGLASEKT NRFALLFGTL DGGIGCIAPI DELTFRRLQS LQRKLVDAVP HVCGLNPRSF RQFKSNGKAH RPGPDNIIDF ELLAHYEMLS LEEQLDIAQQ
1401: IGTTRAQILS NFADISLGTS FL
0101: LVCHYRLHGN VESMAVLSDG AENRRDSIAL AFRDTKITCL EFDDAIHGLR TSSMHCFEGP EWQHLKRGRE SFAWGPVIKS DPLGRCGAAL IYGLQMAILK
0201: AAQVGQSLVG EDEPTRALSS SAVRVESSYL IDLRALETNH VKDFTFVHGY IEPVLVILHE REPTWAGRIS SKHHTCMISA FSISMTLKQH PVIWSAANLP
0301: HDAYQILSVP PPISGVLVVC ANSIHYHSQS TSCSLALNSF SSQPDGSPEI PKLNFHVELD AAKATWLSND IVMFSTKTGE MLLLTVVYDG RTVRRLDLMK
0401: SKASVISSGA TTIGSSFFFL GSRLGDSLLV QFSCGVATSV LPDLIDERSG DIEGDLPFPK RLKRVPSDVL QDVTSVEELS FQNNMLPNSI ESAQKISYVV
0501: RDKLINVGPL KDFSYGLRVN ADANATGNAK QSNYELVCCS GHGKNGALSV LQQSIRPDLI TEVELPSCRG IWTVYYKSSR AHTSEDNEYH AYLIISLESR
0601: TMVLETGDDL GEVTETVDYY VQGATIAAGN LFGRRRVIQV YATGARVLDG SFMTQELNFT AHSSESSSSS SEPLGVASAS IADPYVLLKM VDGTVQLLVG
0701: DHSTCALSIS VPSIFTSSSE KISACTLYCD RGPEPWLRKT RSDAWLSSGI AEPIDGSGSS SQEQSDIYCI ICYESGKLEI FEVPSFRCVF SVESFFSGEA
0801: LLVDSKGRHD DTKVSLKKEA DSIRVVELAM HRWSGQFSRP FLFGLLNDGT FLCYHAFCYE DSESNVKDNS FSPAGSVDLA SASDSRLKNL RFHRISVDIT
0901: LREDISSLAR PRITIFNNVG GYEGLFLSGT RPVWVMVCRQ RFRVHPQLCD GPIEAFTVLH NVNCCHGLIY VTSQGFLKIC QLPEAYNYDN YWPVQKIPLH
1001: GTPHQVTYYA EQSLYPLIVS VPVVRPLNQV LSIMADQDLV HHMDNDATSA DDLQKTYTVE EFEVRVLELE KPSGRWETRS TIPMQSFENA LTVRIVTLHN
1101: TTTKENETLM AIGTAYVQGE DVAARGRVLL FSFTKSENSQ NLVTEVYSKE SKGAVSAVAS LQGHLLIAAG PKITLSKWTG SELTAVAFYD APLHVVSLNI
1201: VKNFVLFGDI HKSVYFLSWK EQGSQLTLLA KDFGSLDCFA TEFLIDGSTL NLAVSDSDKN LQIFYYAPKM VESWKGQKLL SRAEFHVGAH LTKFMRLQML
1301: PAPGLASEKT NRFALLFGTL DGGIGCIAPI DELTFRRLQS LQRKLVDAVP HVCGLNPRSF RQFKSNGKAH RPGPDNIIDF ELLAHYEMLS LEEQLDIAQQ
1401: IGTTRAQILS NFADISLGTS FL
0001: MSFAAYKMMH WPTGVENCAS GYITHSLSDS TLQIPIVSVH DDIEAEWPNP KRGIGPLPNV VITAANILEV YIVRAQEEGN TQELRNPKLA KRGGVMDGVY
0101: GVSLELVCHY RLHGNVESIA VLPMGGGNSS KGRDSIILTF RDAKISVLEF DDSIHSLRMT SMHCFEGPDW LHLKRGRESF PRGPLVKVDP QGRCGGVLVY
0201: GLQMIILKTS QVGSGLVGDD DAFSSGGTVS ARVESSYIIN LRDLEMKHVK DFVFLHGYIE PVIVILQEEE HTWAGRVSWK HHTCVLSALS INSTLKQHPV
0301: IWSAINLPHD AYKLLAVPSP IGGVLVLCAN TIHYHSQSAS CALALNNYAS SADSSQELPA SNFSVELDAA HGTWISNDVA LLSTKSGELL LLTLIYDGRA
0401: VQRLDLSKSK ASVLASDITS VGNSLFFLGS RLGDSLLVQF SCRSGPAASL PGLRDEDEDI EGEGHQAKRL RMTSDTFQDT IGNEELSLFG STPNNSDSAQ
0501: KSFSFAVRDS LVNVGPVKDF AYGLRINADA NATGVSKQSN YELVCCSGHG KNGALCVLRQ SIRPEMITEV ELPGCKGIWT VYHKSSRGHN ADSSKMAADE
0601: DEYHAYLIIS LEARTMVLET ADLLTEVTES VDYYVQGRTI AAGNLFGRRR VIQVFEHGAR ILDGSFMNQE LSFGASNSES NSGSESSTVS SVSIADPYVL
0701: LRMTDDSIRL LVGDPSTCTV SISSPSVLEG SKRKISACTL YHDKGPEPWL RKASTDAWLS SGVGEAVDSV DGGPQDQGDI YCVVCYESGA LEIFDVPSFN
0801: CVFSVDKFAS GRRHLSDMPI HELEYELNKN SEDNTSSKEI KNTRVVELAM QRWSGHHTRP FLFAVLADGT ILCYHAYLFD GVDSTKAENS LSSENPAALN
0901: SSGSSKLRNL KFLRIPLDTS TREGTSDGVA SQRITMFKNI SGHQGFFLSG SRPGWCMLFR ERLRFHSQLC DGSIAAFTVL HNVNCNHGFI YVTAQGVLKI
1001: CQLPSASIYD NYWPVQKIPL KATPHQVTYY AEKNLYPLIV SYPVSKPLNQ VLSSLVDQEA GQQLDNHNMS SDDLQRTYTV EEFEIQILEP ERSGGPWETK
1101: AKIPMQTSEH ALTVRVVTLL NASTGENETL LAVGTAYVQG EDVAARGRVL LFSFGKNGDN SQNVVTEVYS RELKGAISAV ASIQGHLLIS SGPKIILHKW
1201: NGTELNGVAF FDAPPLYVVS MNVVKSFILL GDVHKSIYFL SWKEQGSQLS LLAKDFESLD CFATEFLIDG STLSLAVSDE QKNIQVFYYA PKMIESWKGL
1301: KLLSRAEFHV GAHVSKFLRL QMVSSGADKI NRFALLFGTL DGSFGCIAPL DEVTFRRLQS LQKKLVDAVP HVAGLNPLAF RQFRSSGKAR RSGPDSIVDC
1401: ELLCHYEMLP LEEQLELAHQ IGTTRYSILK DLVDLSVGTS FL
0101: GVSLELVCHY RLHGNVESIA VLPMGGGNSS KGRDSIILTF RDAKISVLEF DDSIHSLRMT SMHCFEGPDW LHLKRGRESF PRGPLVKVDP QGRCGGVLVY
0201: GLQMIILKTS QVGSGLVGDD DAFSSGGTVS ARVESSYIIN LRDLEMKHVK DFVFLHGYIE PVIVILQEEE HTWAGRVSWK HHTCVLSALS INSTLKQHPV
0301: IWSAINLPHD AYKLLAVPSP IGGVLVLCAN TIHYHSQSAS CALALNNYAS SADSSQELPA SNFSVELDAA HGTWISNDVA LLSTKSGELL LLTLIYDGRA
0401: VQRLDLSKSK ASVLASDITS VGNSLFFLGS RLGDSLLVQF SCRSGPAASL PGLRDEDEDI EGEGHQAKRL RMTSDTFQDT IGNEELSLFG STPNNSDSAQ
0501: KSFSFAVRDS LVNVGPVKDF AYGLRINADA NATGVSKQSN YELVCCSGHG KNGALCVLRQ SIRPEMITEV ELPGCKGIWT VYHKSSRGHN ADSSKMAADE
0601: DEYHAYLIIS LEARTMVLET ADLLTEVTES VDYYVQGRTI AAGNLFGRRR VIQVFEHGAR ILDGSFMNQE LSFGASNSES NSGSESSTVS SVSIADPYVL
0701: LRMTDDSIRL LVGDPSTCTV SISSPSVLEG SKRKISACTL YHDKGPEPWL RKASTDAWLS SGVGEAVDSV DGGPQDQGDI YCVVCYESGA LEIFDVPSFN
0801: CVFSVDKFAS GRRHLSDMPI HELEYELNKN SEDNTSSKEI KNTRVVELAM QRWSGHHTRP FLFAVLADGT ILCYHAYLFD GVDSTKAENS LSSENPAALN
0901: SSGSSKLRNL KFLRIPLDTS TREGTSDGVA SQRITMFKNI SGHQGFFLSG SRPGWCMLFR ERLRFHSQLC DGSIAAFTVL HNVNCNHGFI YVTAQGVLKI
1001: CQLPSASIYD NYWPVQKIPL KATPHQVTYY AEKNLYPLIV SYPVSKPLNQ VLSSLVDQEA GQQLDNHNMS SDDLQRTYTV EEFEIQILEP ERSGGPWETK
1101: AKIPMQTSEH ALTVRVVTLL NASTGENETL LAVGTAYVQG EDVAARGRVL LFSFGKNGDN SQNVVTEVYS RELKGAISAV ASIQGHLLIS SGPKIILHKW
1201: NGTELNGVAF FDAPPLYVVS MNVVKSFILL GDVHKSIYFL SWKEQGSQLS LLAKDFESLD CFATEFLIDG STLSLAVSDE QKNIQVFYYA PKMIESWKGL
1301: KLLSRAEFHV GAHVSKFLRL QMVSSGADKI NRFALLFGTL DGSFGCIAPL DEVTFRRLQS LQKKLVDAVP HVAGLNPLAF RQFRSSGKAR RSGPDSIVDC
1401: ELLCHYEMLP LEEQLELAHQ IGTTRYSILK DLVDLSVGTS FL
Arabidopsis Description
CPSF160Cleavage and polyadenylation specificity factor subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGR0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.