Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46934 | Canola | cytosol | 90.15 | 89.78 |
| Bra022557.1-P | Field mustard | cytosol | 90.01 | 89.64 |
| CDX91600 | Canola | cytosol | 89.81 | 89.43 |
| VIT_16s0022g01860.t01 | Wine grape | cytosol, nucleus, plastid | 72.54 | 74.24 |
| KRH38714 | Soybean | nucleus | 73.86 | 73.5 |
| KRH09220 | Soybean | nucleus | 73.58 | 73.32 |
| Zm00001d004153_P002 | Maize | nucleus | 12.69 | 71.21 |
| GSMUA_Achr11P... | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 30.03 | 71.1 |
| Solyc03g007100.2.1 | Tomato | nucleus | 68.1 | 68.91 |
| GSMUA_Achr11P... | Banana | cytosol, plasma membrane, plastid | 24.55 | 66.04 |
| TraesCS2B01G074500.1 | Wheat | cytosol | 63.94 | 64.84 |
| TraesCS2D01G060100.3 | Wheat | cytosol, nucleus, plastid | 64.15 | 64.59 |
| HORVU2Hr1G011580.28 | Barley | nucleus | 63.73 | 64.4 |
| TraesCS2A01G061100.3 | Wheat | nucleus | 63.87 | 64.09 |
| KXG25932 | Sorghum | cytosol | 62.62 | 62.71 |
| GSMUA_Achr11P... | Banana | cytosol | 9.36 | 60.0 |
| Zm00001d004154_P002 | Maize | plasma membrane | 48.96 | 58.11 |
| Os04t0252200-01 | Rice | cytosol, nucleus, plasma membrane | 8.67 | 51.87 |
Protein Annotations
| MapMan:16.2.1.2.1 | Gene3D:2.130.10.10 | EntrezGene:835240 | ProteinID:AED96112.1 | ArrayExpress:AT5G51660 | EnsemblPlantsGene:AT5G51660 |
| RefSeq:AT5G51660 | TAIR:AT5G51660 | RefSeq:AT5G51660-TAIR-G | EnsemblPlants:AT5G51660.1 | TAIR:AT5G51660.1 | EMBL:AY140902 |
| Unigene:At.43551 | ProteinID:BAB11613.1 | Symbol:CPSF160 | InterPro:Cleavage/polyA-sp_fac_asu_C | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 |
| GO:GO:0006378 | GO:GO:0006379 | GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| InterPro:IPR015943 | RefSeq:NP_199979.2 | PFAM:PF03178 | PFAM:PF10433 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR10644 | PANTHER:PTHR10644:SF2 | UniProt:Q9FGR0 |
| UniParc:UPI00001970C0 | InterPro:WD40/YVTN_repeat-like_dom_sf | SEG:seg | : | : | : |
Description
CPSF160Cleavage and polyadenylation specificity factor subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGR0]
Coordinates
chr5:+:20980005..20989499
Molecular Weight (calculated)
158084.0 Da
IEP (calculated)
6.075
GRAVY (calculated)
-0.112
Length
1442 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSFAAYKMMH WPTGVENCAS GYITHSLSDS TLQIPIVSVH DDIEAEWPNP KRGIGPLPNV VITAANILEV YIVRAQEEGN TQELRNPKLA KRGGVMDGVY
0101: GVSLELVCHY RLHGNVESIA VLPMGGGNSS KGRDSIILTF RDAKISVLEF DDSIHSLRMT SMHCFEGPDW LHLKRGRESF PRGPLVKVDP QGRCGGVLVY
0201: GLQMIILKTS QVGSGLVGDD DAFSSGGTVS ARVESSYIIN LRDLEMKHVK DFVFLHGYIE PVIVILQEEE HTWAGRVSWK HHTCVLSALS INSTLKQHPV
0301: IWSAINLPHD AYKLLAVPSP IGGVLVLCAN TIHYHSQSAS CALALNNYAS SADSSQELPA SNFSVELDAA HGTWISNDVA LLSTKSGELL LLTLIYDGRA
0401: VQRLDLSKSK ASVLASDITS VGNSLFFLGS RLGDSLLVQF SCRSGPAASL PGLRDEDEDI EGEGHQAKRL RMTSDTFQDT IGNEELSLFG STPNNSDSAQ
0501: KSFSFAVRDS LVNVGPVKDF AYGLRINADA NATGVSKQSN YELVCCSGHG KNGALCVLRQ SIRPEMITEV ELPGCKGIWT VYHKSSRGHN ADSSKMAADE
0601: DEYHAYLIIS LEARTMVLET ADLLTEVTES VDYYVQGRTI AAGNLFGRRR VIQVFEHGAR ILDGSFMNQE LSFGASNSES NSGSESSTVS SVSIADPYVL
0701: LRMTDDSIRL LVGDPSTCTV SISSPSVLEG SKRKISACTL YHDKGPEPWL RKASTDAWLS SGVGEAVDSV DGGPQDQGDI YCVVCYESGA LEIFDVPSFN
0801: CVFSVDKFAS GRRHLSDMPI HELEYELNKN SEDNTSSKEI KNTRVVELAM QRWSGHHTRP FLFAVLADGT ILCYHAYLFD GVDSTKAENS LSSENPAALN
0901: SSGSSKLRNL KFLRIPLDTS TREGTSDGVA SQRITMFKNI SGHQGFFLSG SRPGWCMLFR ERLRFHSQLC DGSIAAFTVL HNVNCNHGFI YVTAQGVLKI
1001: CQLPSASIYD NYWPVQKIPL KATPHQVTYY AEKNLYPLIV SYPVSKPLNQ VLSSLVDQEA GQQLDNHNMS SDDLQRTYTV EEFEIQILEP ERSGGPWETK
1101: AKIPMQTSEH ALTVRVVTLL NASTGENETL LAVGTAYVQG EDVAARGRVL LFSFGKNGDN SQNVVTEVYS RELKGAISAV ASIQGHLLIS SGPKIILHKW
1201: NGTELNGVAF FDAPPLYVVS MNVVKSFILL GDVHKSIYFL SWKEQGSQLS LLAKDFESLD CFATEFLIDG STLSLAVSDE QKNIQVFYYA PKMIESWKGL
1301: KLLSRAEFHV GAHVSKFLRL QMVSSGADKI NRFALLFGTL DGSFGCIAPL DEVTFRRLQS LQKKLVDAVP HVAGLNPLAF RQFRSSGKAR RSGPDSIVDC
1401: ELLCHYEMLP LEEQLELAHQ IGTTRYSILK DLVDLSVGTS FL
0101: GVSLELVCHY RLHGNVESIA VLPMGGGNSS KGRDSIILTF RDAKISVLEF DDSIHSLRMT SMHCFEGPDW LHLKRGRESF PRGPLVKVDP QGRCGGVLVY
0201: GLQMIILKTS QVGSGLVGDD DAFSSGGTVS ARVESSYIIN LRDLEMKHVK DFVFLHGYIE PVIVILQEEE HTWAGRVSWK HHTCVLSALS INSTLKQHPV
0301: IWSAINLPHD AYKLLAVPSP IGGVLVLCAN TIHYHSQSAS CALALNNYAS SADSSQELPA SNFSVELDAA HGTWISNDVA LLSTKSGELL LLTLIYDGRA
0401: VQRLDLSKSK ASVLASDITS VGNSLFFLGS RLGDSLLVQF SCRSGPAASL PGLRDEDEDI EGEGHQAKRL RMTSDTFQDT IGNEELSLFG STPNNSDSAQ
0501: KSFSFAVRDS LVNVGPVKDF AYGLRINADA NATGVSKQSN YELVCCSGHG KNGALCVLRQ SIRPEMITEV ELPGCKGIWT VYHKSSRGHN ADSSKMAADE
0601: DEYHAYLIIS LEARTMVLET ADLLTEVTES VDYYVQGRTI AAGNLFGRRR VIQVFEHGAR ILDGSFMNQE LSFGASNSES NSGSESSTVS SVSIADPYVL
0701: LRMTDDSIRL LVGDPSTCTV SISSPSVLEG SKRKISACTL YHDKGPEPWL RKASTDAWLS SGVGEAVDSV DGGPQDQGDI YCVVCYESGA LEIFDVPSFN
0801: CVFSVDKFAS GRRHLSDMPI HELEYELNKN SEDNTSSKEI KNTRVVELAM QRWSGHHTRP FLFAVLADGT ILCYHAYLFD GVDSTKAENS LSSENPAALN
0901: SSGSSKLRNL KFLRIPLDTS TREGTSDGVA SQRITMFKNI SGHQGFFLSG SRPGWCMLFR ERLRFHSQLC DGSIAAFTVL HNVNCNHGFI YVTAQGVLKI
1001: CQLPSASIYD NYWPVQKIPL KATPHQVTYY AEKNLYPLIV SYPVSKPLNQ VLSSLVDQEA GQQLDNHNMS SDDLQRTYTV EEFEIQILEP ERSGGPWETK
1101: AKIPMQTSEH ALTVRVVTLL NASTGENETL LAVGTAYVQG EDVAARGRVL LFSFGKNGDN SQNVVTEVYS RELKGAISAV ASIQGHLLIS SGPKIILHKW
1201: NGTELNGVAF FDAPPLYVVS MNVVKSFILL GDVHKSIYFL SWKEQGSQLS LLAKDFESLD CFATEFLIDG STLSLAVSDE QKNIQVFYYA PKMIESWKGL
1301: KLLSRAEFHV GAHVSKFLRL QMVSSGADKI NRFALLFGTL DGSFGCIAPL DEVTFRRLQS LQKKLVDAVP HVAGLNPLAF RQFRSSGKAR RSGPDSIVDC
1401: ELLCHYEMLP LEEQLELAHQ IGTTRYSILK DLVDLSVGTS FL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.