Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d004153_P002 | Maize | nucleus | 13.26 | 73.54 |
| VIT_16s0022g01860.t01 | Wine grape | cytosol, nucleus, plastid | 72.56 | 73.39 |
| GSMUA_Achr11P... | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 30.81 | 72.09 |
| KRH09220 | Soybean | nucleus | 73.05 | 71.94 |
| KRH38714 | Soybean | nucleus | 72.7 | 71.5 |
| AT5G51660.1 | Thale cress | cytosol | 68.91 | 68.1 |
| CDY46934 | Canola | cytosol | 69.05 | 67.96 |
| Bra022557.1-P | Field mustard | cytosol | 68.98 | 67.89 |
| CDX91600 | Canola | cytosol | 68.77 | 67.68 |
| HORVU2Hr1G011580.28 | Barley | nucleus | 64.14 | 64.05 |
| TraesCS2B01G074500.1 | Wheat | cytosol | 63.86 | 63.99 |
| TraesCS2D01G060100.3 | Wheat | cytosol, nucleus, plastid | 64.14 | 63.83 |
| GSMUA_Achr11P... | Banana | cytosol, plasma membrane, plastid | 23.86 | 63.43 |
| TraesCS2A01G061100.3 | Wheat | nucleus | 63.93 | 63.4 |
| KXG25932 | Sorghum | cytosol | 63.58 | 62.92 |
| Zm00001d004154_P002 | Maize | plasma membrane | 48.98 | 57.45 |
| GSMUA_Achr11P... | Banana | cytosol | 8.7 | 55.11 |
| Os04t0252200-01 | Rice | cytosol, nucleus, plasma membrane | 8.35 | 49.38 |
Protein Annotations
| MapMan:16.2.1.2.1 | Gene3D:2.130.10.10 | InterPro:Cleavage/polyA-sp_fac_asu_C | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 | GO:GO:0006378 |
| GO:GO:0006379 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR015943 | UniProt:K4BED3 |
| PFAM:PF03178 | PFAM:PF10433 | PANTHER:PTHR10644 | PANTHER:PTHR10644:SF2 | EnsemblPlantsGene:Solyc03g007100.2 | EnsemblPlants:Solyc03g007100.2.1 |
| UniParc:UPI0002767F60 | InterPro:WD40/YVTN_repeat-like_dom_sf | SEG:seg | : | : | : |
Description
Cleavage and polyadenylation specificity factor subunit 1 [Source:Projected from Arabidopsis thaliana (AT5G51660) UniProtKB/Swiss-Prot;Acc:Q9FGR0]
Coordinates
chr3:-:1662107..1701529
Molecular Weight (calculated)
156065.0 Da
IEP (calculated)
6.425
GRAVY (calculated)
-0.077
Length
1425 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSFAACKTMH CPTGIENCAS GFITHSAADI TPQIQTADVD SDWPATKPIG PVPNLVVSAG NVLDVYLIRV EQASSRDAAE VVKRGGLVAG ISAASLELVC
0101: TYRLHGNIYS MGVITAGGAD GGKRRDSIIL SFEDAKMSVL EFDDATHGLR TSSMHFFEGP DWFHLKRGRE SFDKGPIIKV DPQGRCAGVF AFEQQMIVLK
0201: AAEVNSSLAG EDSAFSAGGA SARIESSYII TLRDLDVRHV KDFTFLHGYI EPVMVILHER ELTWSGRVSW KHHTCMVSAF SISTTLKQHP LIWSATNLPH
0301: DAYKLLAVPS PIGGVLVIGA NTIHYHSQSS SCSLALNNFV FFGDNSDVAM LSTKTGELLL LTIIYDGRIV QKLDLSKSRA SVLTSGITTI GDSLFFLGSR
0401: LGDSLLVQFS SGLGGSNLPP GVQEEVGDIE SDAPSAKRLR MSSSDALQDM INGEELSLYG TAPNNAQSAQ KTFSFAVRDS LINVGPLKDF SYGMRINADL
0501: NATGIAKQSN YELVCCSGHG KNGSLSVLQQ SIRPETITQE ALPGCKGIWT VYHKNTRIHL SESSRMADEE DEYHAYLIIS LEARTMVLQT ANNLEEVTEN
0601: VDYYVQGTTL AAGNLFGRRR VIQVFAHGAR ILDGAFMTQE LSFKASNVES GSSSDTSIVA SVSIADPYVL LRMTNGSLQL LVGDPSSCSV SLTVPSVFES
0701: SKKSISACTL YHDKGPEPWL RKTSTDAWLS SGMGEAIDGA DGVIQDQGDV YCVVCYENGT LEIFDVPSFT CVFSVDKFIS GRTYLVDTFM QDSVNGLHAH
0801: SKNTEDVIRP GQKENSKDVK INVVELMMHR WIGKHSRPFL FGILADGTIL SYHAYVFEGS ENSSKVDGSV SSQNSISLSS TNASRLRNLR FVRVPVDNYA
0901: REEMPSGSQL QRMNVYKNIG GSQGIFLTGS RPSWFMVFRE RLRIHPQLCD GPIVAFTVLH NVNCNHGLIY VTALGTLKIC QLPSFLSYDN YWPVQKIPLK
1001: GTPHQVAYFA EKNVYSVIVS VPVLKPLNQV LSSIADQEVG QQFDPDNLNY EGSYPIEEFE VRILEPEKSG GPWKTRASIP MQSSENALTV RMVTLFNTKT
1101: KENETLLAVG TAYVQGEDVA ARGRVLLFSI DRTADNSRTL VSEVYSKELK GAIPALASLQ GHLLIASGPK IILHKWTGSE LNGVAFCDYP PLHAVSLNIV
1201: KNFILLGDIH KSISFVSWKE PQLSLLAKDF SPLDCLATEF LIDGSTLSLV VSDDQKNVQI FYYAPKVSES WKGQKLLSRA EFHVGSRITK FLRLQLLPTT
1301: SERTATTPGS DKTNRFATVF GTLEGSLGCI APLDELTFRR LQSLQKKLVT AVTHVAGLNP RSFRQFRSNG KAHRPGPDNI VDCELLSHYE MLPLEEQLEI
1401: AQQIGTTRMQ IMSNLNDMIL GTSFL
0101: TYRLHGNIYS MGVITAGGAD GGKRRDSIIL SFEDAKMSVL EFDDATHGLR TSSMHFFEGP DWFHLKRGRE SFDKGPIIKV DPQGRCAGVF AFEQQMIVLK
0201: AAEVNSSLAG EDSAFSAGGA SARIESSYII TLRDLDVRHV KDFTFLHGYI EPVMVILHER ELTWSGRVSW KHHTCMVSAF SISTTLKQHP LIWSATNLPH
0301: DAYKLLAVPS PIGGVLVIGA NTIHYHSQSS SCSLALNNFV FFGDNSDVAM LSTKTGELLL LTIIYDGRIV QKLDLSKSRA SVLTSGITTI GDSLFFLGSR
0401: LGDSLLVQFS SGLGGSNLPP GVQEEVGDIE SDAPSAKRLR MSSSDALQDM INGEELSLYG TAPNNAQSAQ KTFSFAVRDS LINVGPLKDF SYGMRINADL
0501: NATGIAKQSN YELVCCSGHG KNGSLSVLQQ SIRPETITQE ALPGCKGIWT VYHKNTRIHL SESSRMADEE DEYHAYLIIS LEARTMVLQT ANNLEEVTEN
0601: VDYYVQGTTL AAGNLFGRRR VIQVFAHGAR ILDGAFMTQE LSFKASNVES GSSSDTSIVA SVSIADPYVL LRMTNGSLQL LVGDPSSCSV SLTVPSVFES
0701: SKKSISACTL YHDKGPEPWL RKTSTDAWLS SGMGEAIDGA DGVIQDQGDV YCVVCYENGT LEIFDVPSFT CVFSVDKFIS GRTYLVDTFM QDSVNGLHAH
0801: SKNTEDVIRP GQKENSKDVK INVVELMMHR WIGKHSRPFL FGILADGTIL SYHAYVFEGS ENSSKVDGSV SSQNSISLSS TNASRLRNLR FVRVPVDNYA
0901: REEMPSGSQL QRMNVYKNIG GSQGIFLTGS RPSWFMVFRE RLRIHPQLCD GPIVAFTVLH NVNCNHGLIY VTALGTLKIC QLPSFLSYDN YWPVQKIPLK
1001: GTPHQVAYFA EKNVYSVIVS VPVLKPLNQV LSSIADQEVG QQFDPDNLNY EGSYPIEEFE VRILEPEKSG GPWKTRASIP MQSSENALTV RMVTLFNTKT
1101: KENETLLAVG TAYVQGEDVA ARGRVLLFSI DRTADNSRTL VSEVYSKELK GAIPALASLQ GHLLIASGPK IILHKWTGSE LNGVAFCDYP PLHAVSLNIV
1201: KNFILLGDIH KSISFVSWKE PQLSLLAKDF SPLDCLATEF LIDGSTLSLV VSDDQKNVQI FYYAPKVSES WKGQKLLSRA EFHVGSRITK FLRLQLLPTT
1301: SERTATTPGS DKTNRFATVF GTLEGSLGCI APLDELTFRR LQSLQKKLVT AVTHVAGLNP RSFRQFRSNG KAHRPGPDNI VDCELLSHYE MLPLEEQLEI
1401: AQQIGTTRMQ IMSNLNDMIL GTSFL
0001: MSFAAYKMMH WPTGVENCAS GYITHSLSDS TLQIPIVSVH DDIEAEWPNP KRGIGPLPNV VITAANILEV YIVRAQEEGN TQELRNPKLA KRGGVMDGVY
0101: GVSLELVCHY RLHGNVESIA VLPMGGGNSS KGRDSIILTF RDAKISVLEF DDSIHSLRMT SMHCFEGPDW LHLKRGRESF PRGPLVKVDP QGRCGGVLVY
0201: GLQMIILKTS QVGSGLVGDD DAFSSGGTVS ARVESSYIIN LRDLEMKHVK DFVFLHGYIE PVIVILQEEE HTWAGRVSWK HHTCVLSALS INSTLKQHPV
0301: IWSAINLPHD AYKLLAVPSP IGGVLVLCAN TIHYHSQSAS CALALNNYAS SADSSQELPA SNFSVELDAA HGTWISNDVA LLSTKSGELL LLTLIYDGRA
0401: VQRLDLSKSK ASVLASDITS VGNSLFFLGS RLGDSLLVQF SCRSGPAASL PGLRDEDEDI EGEGHQAKRL RMTSDTFQDT IGNEELSLFG STPNNSDSAQ
0501: KSFSFAVRDS LVNVGPVKDF AYGLRINADA NATGVSKQSN YELVCCSGHG KNGALCVLRQ SIRPEMITEV ELPGCKGIWT VYHKSSRGHN ADSSKMAADE
0601: DEYHAYLIIS LEARTMVLET ADLLTEVTES VDYYVQGRTI AAGNLFGRRR VIQVFEHGAR ILDGSFMNQE LSFGASNSES NSGSESSTVS SVSIADPYVL
0701: LRMTDDSIRL LVGDPSTCTV SISSPSVLEG SKRKISACTL YHDKGPEPWL RKASTDAWLS SGVGEAVDSV DGGPQDQGDI YCVVCYESGA LEIFDVPSFN
0801: CVFSVDKFAS GRRHLSDMPI HELEYELNKN SEDNTSSKEI KNTRVVELAM QRWSGHHTRP FLFAVLADGT ILCYHAYLFD GVDSTKAENS LSSENPAALN
0901: SSGSSKLRNL KFLRIPLDTS TREGTSDGVA SQRITMFKNI SGHQGFFLSG SRPGWCMLFR ERLRFHSQLC DGSIAAFTVL HNVNCNHGFI YVTAQGVLKI
1001: CQLPSASIYD NYWPVQKIPL KATPHQVTYY AEKNLYPLIV SYPVSKPLNQ VLSSLVDQEA GQQLDNHNMS SDDLQRTYTV EEFEIQILEP ERSGGPWETK
1101: AKIPMQTSEH ALTVRVVTLL NASTGENETL LAVGTAYVQG EDVAARGRVL LFSFGKNGDN SQNVVTEVYS RELKGAISAV ASIQGHLLIS SGPKIILHKW
1201: NGTELNGVAF FDAPPLYVVS MNVVKSFILL GDVHKSIYFL SWKEQGSQLS LLAKDFESLD CFATEFLIDG STLSLAVSDE QKNIQVFYYA PKMIESWKGL
1301: KLLSRAEFHV GAHVSKFLRL QMVSSGADKI NRFALLFGTL DGSFGCIAPL DEVTFRRLQS LQKKLVDAVP HVAGLNPLAF RQFRSSGKAR RSGPDSIVDC
1401: ELLCHYEMLP LEEQLELAHQ IGTTRYSILK DLVDLSVGTS FL
0101: GVSLELVCHY RLHGNVESIA VLPMGGGNSS KGRDSIILTF RDAKISVLEF DDSIHSLRMT SMHCFEGPDW LHLKRGRESF PRGPLVKVDP QGRCGGVLVY
0201: GLQMIILKTS QVGSGLVGDD DAFSSGGTVS ARVESSYIIN LRDLEMKHVK DFVFLHGYIE PVIVILQEEE HTWAGRVSWK HHTCVLSALS INSTLKQHPV
0301: IWSAINLPHD AYKLLAVPSP IGGVLVLCAN TIHYHSQSAS CALALNNYAS SADSSQELPA SNFSVELDAA HGTWISNDVA LLSTKSGELL LLTLIYDGRA
0401: VQRLDLSKSK ASVLASDITS VGNSLFFLGS RLGDSLLVQF SCRSGPAASL PGLRDEDEDI EGEGHQAKRL RMTSDTFQDT IGNEELSLFG STPNNSDSAQ
0501: KSFSFAVRDS LVNVGPVKDF AYGLRINADA NATGVSKQSN YELVCCSGHG KNGALCVLRQ SIRPEMITEV ELPGCKGIWT VYHKSSRGHN ADSSKMAADE
0601: DEYHAYLIIS LEARTMVLET ADLLTEVTES VDYYVQGRTI AAGNLFGRRR VIQVFEHGAR ILDGSFMNQE LSFGASNSES NSGSESSTVS SVSIADPYVL
0701: LRMTDDSIRL LVGDPSTCTV SISSPSVLEG SKRKISACTL YHDKGPEPWL RKASTDAWLS SGVGEAVDSV DGGPQDQGDI YCVVCYESGA LEIFDVPSFN
0801: CVFSVDKFAS GRRHLSDMPI HELEYELNKN SEDNTSSKEI KNTRVVELAM QRWSGHHTRP FLFAVLADGT ILCYHAYLFD GVDSTKAENS LSSENPAALN
0901: SSGSSKLRNL KFLRIPLDTS TREGTSDGVA SQRITMFKNI SGHQGFFLSG SRPGWCMLFR ERLRFHSQLC DGSIAAFTVL HNVNCNHGFI YVTAQGVLKI
1001: CQLPSASIYD NYWPVQKIPL KATPHQVTYY AEKNLYPLIV SYPVSKPLNQ VLSSLVDQEA GQQLDNHNMS SDDLQRTYTV EEFEIQILEP ERSGGPWETK
1101: AKIPMQTSEH ALTVRVVTLL NASTGENETL LAVGTAYVQG EDVAARGRVL LFSFGKNGDN SQNVVTEVYS RELKGAISAV ASIQGHLLIS SGPKIILHKW
1201: NGTELNGVAF FDAPPLYVVS MNVVKSFILL GDVHKSIYFL SWKEQGSQLS LLAKDFESLD CFATEFLIDG STLSLAVSDE QKNIQVFYYA PKMIESWKGL
1301: KLLSRAEFHV GAHVSKFLRL QMVSSGADKI NRFALLFGTL DGSFGCIAPL DEVTFRRLQS LQKKLVDAVP HVAGLNPLAF RQFRSSGKAR RSGPDSIVDC
1401: ELLCHYEMLP LEEQLELAHQ IGTTRYSILK DLVDLSVGTS FL
Arabidopsis Description
CPSF160Cleavage and polyadenylation specificity factor subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGR0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.