Factsheet for Solyc02g070240.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g009620.2.1
Solyc01g009630.2.1
Solyc01g058260.2.1
Solyc02g021760.2.1
Solyc02g070240.2.1
Solyc03g007100.2.1
Solyc03g025540.2.1
Solyc03g025880.2.1
Solyc04g008030.1.1
Solyc07g005320.2.1
Solyc10g050540.1.1
Solyc12g038540.1.1
Solyc12g094490.1.1
Solyc12g099180.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30460.1	Solyc10g050540.1.1	AT1G17760.1	18479511
AT1G30460.1	Solyc02g021760.2.1	AT1G30460.1	18479511
AT1G30460.1	Solyc02g070240.2.1	AT1G30460.1	18479511
AT1G30460.1	Solyc04g008030.1.1	AT2G01730.1	16897494
AT1G30460.1	Solyc01g058260.2.1	AT3G06560.1	16897494
AT1G30460.1	Solyc12g099180.1.1	AT3G06560.1	16897494
AT1G30460.1	Solyc01g058260.2.1	AT3G06560.1	18479511
AT1G30460.1	Solyc12g099180.1.1	AT3G06560.1	18479511
AT1G30460.1	Solyc12g094490.1.1	AT4G04885.1	18479511
AT1G30460.1	Solyc01g009620.2.1	AT4G25550.1	18479511
AT1G30460.1	Solyc01g009630.2.1	AT4G25550.1	18479511
AT1G30460.1	Solyc03g025880.2.1	AT4G25550.1	18479511
AT1G30460.1	Solyc03g025540.2.1	AT5G23880.1	16897494
AT1G30460.1	Solyc03g025540.2.1	AT5G23880.1	18479511
AT1G30460.1	Solyc03g007100.2.1	AT5G51660.1	16897494
AT1G30460.1	Solyc03g007100.2.1	AT5G51660.1	18479511
AT1G30460.1	Solyc07g005320.2.1	AT5G58040.1	16282318
AT1G30460.1	Solyc07g005320.2.1	AT5G58040.1	18479511
AT1G30460.1	Solyc12g038540.1.1	AT5G60940.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g021760.2.1	Tomato	nucleus	71.98	70.1
PGSC0003DMT400054373	Potato	cytosol, nucleus, plastid	27.42	69.17
VIT_10s0003g04600.t01	Wine grape	nucleus	67.21	67.01
KRH36762	Soybean	nucleus	66.47	65.49
KRH11760	Soybean	nucleus	65.57	63.68
AT1G30460.1	Thale cress	nucleus	59.46	63.23
CDX98205	Canola	nucleus	50.82	62.68
GSMUA_Achr6P19820_001	Banana	nucleus	63.34	61.42
Bra014881.1-P	Field mustard	nucleus	52.91	61.21
Bra010767.1-P	Field mustard	nucleus	57.08	60.79
EER88812	Sorghum	cytosol, nucleus, peroxisome	57.08	59.38
Zm00001d014378_P001	Maize	cytosol, nucleus, peroxisome	56.18	58.91
GSMUA_Achr9P30440_001	Banana	nucleus	57.38	58.6
CDX77591	Canola	nucleus	51.42	57.98
TraesCS7A01G461800.1	Wheat	nucleus	55.74	57.54
TraesCS7D01G450100.1	Wheat	nucleus	55.59	57.38
Zm00001d036594_P001	Maize	cytosol, nucleus, peroxisome	55.29	57.34
HORVU7Hr1G106340.5	Barley	cytosol	55.44	57.32
TraesCS7B01G363200.2	Wheat	nucleus	55.74	57.27
CDY12057	Canola	cytosol, nucleus, peroxisome	54.4	55.64
Os06t0677700-00	Rice	cytosol, nucleus, plasma membrane	55.89	54.66
Zm00001d014379_P001	Maize	nucleus	19.52	53.25
Zm00001d036595_P001	Maize	nucleus	19.52	52.19
Solyc08g007730.2.1	Tomato	cytosol	14.46	24.56
Solyc08g007750.2.1	Tomato	nucleus	13.41	24.39
Solyc08g007760.2.1	Tomato	nucleus	10.13	22.74

Protein Annotations

MapMan:16.2.1.2.5	Gene3D:3.10.590.10	Gene3D:4.10.1000.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0046872	InterPro:IPR000571	InterPro:IPR007275	UniProt:K4B806	PFAM:PF04146
PFscan:PS50103	PFscan:PS50882	PANTHER:PTHR12357	PANTHER:PTHR12357:SF59	SMART:SM00356	SUPFAM:SSF90229
EnsemblPlantsGene:Solyc02g070240.2	EnsemblPlants:Solyc02g070240.2.1	UniParc:UPI000276867E	InterPro:YTH_domain	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2:-:39989910..40004327

Molecular Weight (calculated)

73776.4 Da

IEP (calculated)

6.513

GRAVY (calculated)

-0.848

Length

671 amino acids

Sequence
(BLAST)

001: MDDGEGGLNF DFEGGLDTGP THPTASVPVI QAGPAPNASV AVVPPGGGVG LGGDGSFVGN RRSFRQTVCR HWLRSLCMKG DACGFLHQYD KSRMPVCRFF
101: RLYGECREQD CVYKHTNEDI KECNMFKLGF CPNGPDCRYR HAKMPGPPPP VVEVLQKIQN LTSHGYSNRF FQNRNTNYST QADKSQIPQV PNVMNQAVKS
201: TATEPPIGQP HQPHQQQVQQ PQHQGPPTQT QTLPGTQQNQ AAIPLPQGPS RYFIVKSCNR ENLELSVQQG VWATQRSNEA KLNEAFDSVE NVILIFSINR
301: TRHFQGLAKM TSRIGGAAKG GNWKHEHGTA HYGRNFSVKW LKLCELSFQK TRHLRNPYNE NLPVKISRDC QELEISVGEQ LASLLYVEPD SELMAISLAA
401: ESKREEERAK GVNPDNGNEN PDIVPFEDNE EEEEEESEEE DEEDEGFGQA LGPAALDRGR GRGIVWPPLV PFRGARPFPG MRGFPPGIMS DGFSYGSMTP
501: DGFPMPDPYG MGGRPFGPFG PRFPGDMMFH SRPPAAGGFG MMMGPARPPF MGGMGPGAPG PPRGGRPMGM HPSFTPPPPP PSQNPRVKKD QRAPFNERND
601: RFSSGPDQGR GQETAGSVVG PDEGVHYPQT ENSFRNDESE SEDEAPRRSR HGDGKKKKNS MDGDATTGTE K

Best Arabidopsis Sequence Match ( AT1G30460.1 )
(BLAST)

001: MEDADGLSFD FEGGLDSGPV QNTASVPVAP PENSSSAAVN VAPTYDHSSA TVAGAGRGRS FRQTVCRHWL RGLCMKGDAC GFLHQFDKAR MPICRFFRLY
101: GECREQDCVY KHTNEDIKEC NMYKLGFCPN GPDCRYRHAK LPGPPPPVEE VLQKIQQLTT YNYGTNRLYQ ARNVAPQLQD RPQGQVPMQG QPQESGNLQQ
201: QQQQQPQQSQ HQVSQTLIPN PADQTNRTSH PLPQGVNRYF VVKSNNRENF ELSVQQGVWA TQRSNEAKLN EAFDSVENVI LIFSVNRTRH FQGCAKMTSR
301: IGGYIGGGNW KHEHGTAQYG RNFSVKWLKL CELSFHKTRN LRNPYNENLP VKISRDCQEL EPSVGEQLAS LLYLEPDSEL MAISIAAEAK REEEKAKGVN
401: PESRAENPDI VPFEDNEEEE EEEDESEEEE ESMAGGPQGR GRGRGIMWPP QMPLGRGIRP MPGMGGFPLG VMGPGDAFPY GPGGYNGMPD PFGMGPRPFG
501: PYGPRFGGDF RGPVPGMMFP GRPPQQFPHG GYGMMGGGRG PHMGGMGNAP RGGRPMYYPP ATSSARPGPS NRKTPERSDE RGVSGDQQNQ DASHDMEQFE
601: VGNSLRNEES ESEDEDEAPR RSRHGEGKKR R

Arabidopsis Description

CPSF3030-kDa cleavage and polyadenylation specificity factor 30 [Source:UniProtKB/Swiss-Prot;Acc:A9LNK9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.