Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400008250 | Potato | nucleus | 5.29 | 61.86 |
| KRH12930 | Soybean | nucleus | 39.42 | 41.72 |
| KRH37905 | Soybean | nucleus | 39.71 | 41.58 |
| VIT_11s0037g00130.t01 | Wine grape | nucleus | 43.62 | 40.84 |
| CDX88655 | Canola | nucleus | 29.42 | 38.81 |
| Bra006786.1-P | Field mustard | nucleus | 29.42 | 38.78 |
| CDY43886 | Canola | nucleus | 32.03 | 38.07 |
| Bra002677.1-P | Field mustard | nucleus | 32.03 | 37.71 |
| AT5G58040.1 | Thale cress | nucleus | 31.67 | 36.54 |
| CDY11833 | Canola | nucleus | 28.04 | 36.34 |
| TraesCS4B01G056200.1 | Wheat | nucleus | 28.04 | 34.16 |
| CDY70580 | Canola | cytosol, nucleus, plastid | 13.99 | 33.05 |
| GSMUA_Achr7P27630_001 | Banana | nucleus | 32.25 | 32.99 |
| TraesCS4A01G258200.3 | Wheat | nucleus | 30.87 | 32.9 |
| KXG37677 | Sorghum | nucleus | 30.51 | 32.69 |
| HORVU4Hr1G009390.7 | Barley | nucleus | 30.14 | 32.58 |
| TraesCS4D01G056600.1 | Wheat | nucleus | 30.51 | 32.48 |
| Zm00001d033843_P007 | Maize | nucleus | 29.86 | 32.42 |
| Zm00001d013380_P001 | Maize | nucleus | 29.35 | 31.74 |
| GSMUA_Achr4P14570_001 | Banana | nucleus | 30.87 | 30.41 |
| Solyc12g099280.1.1 | Tomato | nucleus | 10.07 | 12.3 |
Protein Annotations
| EnsemblPlants:Solyc07g005320.2.1 | EnsemblPlantsGene:Solyc07g005320.2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0042802 | InterPro:Fip1 | PANTHER:PTHR36884 | PFAM:PF05182 | SEG:seg |
| UniParc:UPI000276BDC5 | UniProt:K4CB04 | MapMan:16.2.1.2.6 | : | : | : |
Description
No Description!
Coordinates
chr7:-:247287..259892
Molecular Weight (calculated)
155839.0 Da
IEP (calculated)
5.074
GRAVY (calculated)
-1.274
Length
1380 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEDDDEFGDL YTDVLRPLTA SFQSQQQPVA QEEAAPKAAG ATSRPIDLNI NSDDEEILYG APNSNSKPNF AGPSAITGQE KTLASPLDVK SGSRLPESNL
0101: YLKLGAGRME GLGGINESDS TARVLVESED VKLAKTEFQD LNFMDEANID IVVEETDDKD DILVGNHQNV GEDHENLKDG TGNAGNFVIE ASGAEQLIPG
0201: LAIPGVSGGA GNTGEGTFED DWDSDSEDDL QIVLNDNTHG PMGMERMGIG EEDDEDEDPL VIVADNDGPS HPPMMEEQDW GEEGGPAANG ERKEILDALK
0301: VNGAPGVAGK VGYPNHAYNH PYHSQYKYVR PGAAPMPGVP PSGPGGIPGQ VRPPVNVGPV AGRGRGDWRP PGMKGGYGMS GWGGGASGRG LGIGLEFTLP
0401: SHKTIFEVDI DGFEEKPWRL PGIDITDFFN FGLNEDGWKD YCKQLEQLRL ESTMQGRIRV YETVRTEQEY DPEMPPELAA AAGMKDIPSE NLNGKIDGTT
0501: NDLGRGSMRM RPPLPTGRPI QVETGSGDRL PSIDNRPPRQ RDSDAIIEIV CQDDDQYTGN DKNEGQLDNI PSTEDFRGDA RRGPLQEHVQ ESDGFQNPYK
0601: SHRREANARR TQFINPIGDH LTKGDGVVPF SPEAPDQFVS DSGGQTSAYD NKNCVSKQEE RGKTVSAHDR SPDITSSNSR DRLQVDSQKE ESFESVDRTH
0701: TPVPSSPTAD RPAQEQDMED RDDIPDQVVG ADTNSEVDGE EMTLDARTDS EAMNDEFLHS AKKQKLSSRH EQSSPQETDD GEDSKAGRSS ENSKVQSGSS
0801: RGYRKLRDDM DEEVVQGRRS LRVDNAKKTV ARDEDRVRKK ARYEKEAEKH SGVVKGREDS YPRKGADSSS AHYVDRRRER EYSEGLWQRR DDDLQGRRAK
0901: MEEPRKRELI DEIGIRHRSK AREFEGSDRE ERHLYRKQLE NVTLRPDYDK DMGARHRERD ELKRYDTLDD RHNKRRKEEV KLSREHIDKE ETFHSHGETM
1001: VRRKRERDDA SDHRKRDELM RLREDEQLYI RHKEDGVFQR ERNDRQRERE EWYRLKQSHE ETLPKREREE IRGGMRAGRV PEEKAWAAQS RGKDEYRNSD
1101: QHSKDVRHAD HIRRRDRVEN ESPSRLRTRE DERRARHDRV NSREDRAPIA SDNSRVNEKR HKDYLKKGKE FESDHNSQMA LNMNEDELNG QKNELVSSKG
1201: KFVQGTNDNK IHRNRQSSKK HQEAASSDDE QEDSRRGRSK LERWTSHKER DFGINAKSSS LNMKDSNVHK GTGTSLANKN QDEALKMVEE NQQPAANYKN
1301: GGAPEINSLE TKPVEDKHLE TVEKLKKRSE RFKLPMPSEK EAPVSKKVEG DPLSSVQSET PPDSEVKPER PARRRRWTSS
0101: YLKLGAGRME GLGGINESDS TARVLVESED VKLAKTEFQD LNFMDEANID IVVEETDDKD DILVGNHQNV GEDHENLKDG TGNAGNFVIE ASGAEQLIPG
0201: LAIPGVSGGA GNTGEGTFED DWDSDSEDDL QIVLNDNTHG PMGMERMGIG EEDDEDEDPL VIVADNDGPS HPPMMEEQDW GEEGGPAANG ERKEILDALK
0301: VNGAPGVAGK VGYPNHAYNH PYHSQYKYVR PGAAPMPGVP PSGPGGIPGQ VRPPVNVGPV AGRGRGDWRP PGMKGGYGMS GWGGGASGRG LGIGLEFTLP
0401: SHKTIFEVDI DGFEEKPWRL PGIDITDFFN FGLNEDGWKD YCKQLEQLRL ESTMQGRIRV YETVRTEQEY DPEMPPELAA AAGMKDIPSE NLNGKIDGTT
0501: NDLGRGSMRM RPPLPTGRPI QVETGSGDRL PSIDNRPPRQ RDSDAIIEIV CQDDDQYTGN DKNEGQLDNI PSTEDFRGDA RRGPLQEHVQ ESDGFQNPYK
0601: SHRREANARR TQFINPIGDH LTKGDGVVPF SPEAPDQFVS DSGGQTSAYD NKNCVSKQEE RGKTVSAHDR SPDITSSNSR DRLQVDSQKE ESFESVDRTH
0701: TPVPSSPTAD RPAQEQDMED RDDIPDQVVG ADTNSEVDGE EMTLDARTDS EAMNDEFLHS AKKQKLSSRH EQSSPQETDD GEDSKAGRSS ENSKVQSGSS
0801: RGYRKLRDDM DEEVVQGRRS LRVDNAKKTV ARDEDRVRKK ARYEKEAEKH SGVVKGREDS YPRKGADSSS AHYVDRRRER EYSEGLWQRR DDDLQGRRAK
0901: MEEPRKRELI DEIGIRHRSK AREFEGSDRE ERHLYRKQLE NVTLRPDYDK DMGARHRERD ELKRYDTLDD RHNKRRKEEV KLSREHIDKE ETFHSHGETM
1001: VRRKRERDDA SDHRKRDELM RLREDEQLYI RHKEDGVFQR ERNDRQRERE EWYRLKQSHE ETLPKREREE IRGGMRAGRV PEEKAWAAQS RGKDEYRNSD
1101: QHSKDVRHAD HIRRRDRVEN ESPSRLRTRE DERRARHDRV NSREDRAPIA SDNSRVNEKR HKDYLKKGKE FESDHNSQMA LNMNEDELNG QKNELVSSKG
1201: KFVQGTNDNK IHRNRQSSKK HQEAASSDDE QEDSRRGRSK LERWTSHKER DFGINAKSSS LNMKDSNVHK GTGTSLANKN QDEALKMVEE NQQPAANYKN
1301: GGAPEINSLE TKPVEDKHLE TVEKLKKRSE RFKLPMPSEK EAPVSKKVEG DPLSSVQSET PPDSEVKPER PARRRRWTSS
0001: MEEDDEFGDL YSDVLQPFQP PVVLPPPPPL PHRSIDLNLR SQDQDVSEPN SAPISRVSDN DAVKLSTQDA TRQAIVDGGG DDKDMSFDIE EPDADSTPTI
0101: PGLFVTGALP GLATDRGVSQ VTTRIEQQVG GGGDGGYGGQ GEGDDWDSDS EDDLQIVLND SSRNVMIGGA DRRSRMGDNE DDDDEDDEDP LVIVADTDPN
0201: QPMEEQMWGE DGLQGIEGDG KDGGEAGKGS GPGGATGPPK AGYSSHGYHP FHSQFKYVRP GAAPIPGGAA SVGGPSSGQV RPPANLGPMA GRGRGDWRPL
0301: GMRNASAAQK GFHQPWGSNT AGRGLDFTLP SHKTIFEVDI DSFEEKPWRY PGVEMTDYFN FGLNEESWKD YCKQLDQHRI QTTMQSRIRV YESGRTDQGY
0401: DPDLPPELAA ATGAQGVPVD SSNLVKPDSV QGDSAKVPAN VRPTLPPGRP IPVETGSGER LPSIDTRAPR MRDLDAIIEI VCQDSHEDEP SGENGTDQAD
0501: SSLPGENVPV ETSYVNNKRP DTESAEHSPA QDEPHKNLLK KQDDEISRST DSGQSFRSSS PVGDRGTRSS SVDREDVGGE AGKDAEMGEE LKMSFTSPQS
0601: AVQEDDGGES KTERSSESSK ARSGSHRDFQ QEEDVIQDKH SSRPANNRKQ YDNNAPHQSR KNQDRGKEME RTRAASKGGR ENSNPHMELD STYIYSIASR
0701: EDFDKRKERD VDGAVWRRKE DDPYSRRGGD EGSRKRDRED DPGFRQRGKM RENEIRSKDD QVPSRKHMDD AGMRNIYEPD DHINKRRKDE EYLRRSRPEK
0801: NEISYGQRES MSRVKRERDD RLEHQKRDVQ HKIRDDFDDH GSLRQRDDIY MQRDGNERLR ERDVLDKLKL PHEDGISARG RERQVAVRGH RGSEDRSSRM
0901: KDEYKASDKE HVTKDTLRHA KQTKRRDYPG EESSSHHRGH EDFSARTDNI VNNEKKPRQE RTGAKIDKFI DTLDGQRLQD RKHKDSRRKI KEQREGTESL
1001: SKQGEQNGSS VVTGSKGTND ARNCRSEIPH QPNTAKRHKE NASSGDEIHD SKRGRTKLER WASHKEREDA VSAKSSSISS KLEEKENNTN GRLSEPVHGS
1101: IGKSRDVTEE KIGHDLADTK DGSEKGPGDR HLDTVEKLKK RSERFKLPMP TEKDTTGVKK MESETLPSAK IEGPVDSEVK AERPARKRRW TSS
0101: PGLFVTGALP GLATDRGVSQ VTTRIEQQVG GGGDGGYGGQ GEGDDWDSDS EDDLQIVLND SSRNVMIGGA DRRSRMGDNE DDDDEDDEDP LVIVADTDPN
0201: QPMEEQMWGE DGLQGIEGDG KDGGEAGKGS GPGGATGPPK AGYSSHGYHP FHSQFKYVRP GAAPIPGGAA SVGGPSSGQV RPPANLGPMA GRGRGDWRPL
0301: GMRNASAAQK GFHQPWGSNT AGRGLDFTLP SHKTIFEVDI DSFEEKPWRY PGVEMTDYFN FGLNEESWKD YCKQLDQHRI QTTMQSRIRV YESGRTDQGY
0401: DPDLPPELAA ATGAQGVPVD SSNLVKPDSV QGDSAKVPAN VRPTLPPGRP IPVETGSGER LPSIDTRAPR MRDLDAIIEI VCQDSHEDEP SGENGTDQAD
0501: SSLPGENVPV ETSYVNNKRP DTESAEHSPA QDEPHKNLLK KQDDEISRST DSGQSFRSSS PVGDRGTRSS SVDREDVGGE AGKDAEMGEE LKMSFTSPQS
0601: AVQEDDGGES KTERSSESSK ARSGSHRDFQ QEEDVIQDKH SSRPANNRKQ YDNNAPHQSR KNQDRGKEME RTRAASKGGR ENSNPHMELD STYIYSIASR
0701: EDFDKRKERD VDGAVWRRKE DDPYSRRGGD EGSRKRDRED DPGFRQRGKM RENEIRSKDD QVPSRKHMDD AGMRNIYEPD DHINKRRKDE EYLRRSRPEK
0801: NEISYGQRES MSRVKRERDD RLEHQKRDVQ HKIRDDFDDH GSLRQRDDIY MQRDGNERLR ERDVLDKLKL PHEDGISARG RERQVAVRGH RGSEDRSSRM
0901: KDEYKASDKE HVTKDTLRHA KQTKRRDYPG EESSSHHRGH EDFSARTDNI VNNEKKPRQE RTGAKIDKFI DTLDGQRLQD RKHKDSRRKI KEQREGTESL
1001: SKQGEQNGSS VVTGSKGTND ARNCRSEIPH QPNTAKRHKE NASSGDEIHD SKRGRTKLER WASHKEREDA VSAKSSSISS KLEEKENNTN GRLSEPVHGS
1101: IGKSRDVTEE KIGHDLADTK DGSEKGPGDR HLDTVEKLKK RSERFKLPMP TEKDTTGVKK MESETLPSAK IEGPVDSEVK AERPARKRRW TSS
Arabidopsis Description
FIPS5FIP1[V]-like protein [Source:UniProtKB/Swiss-Prot;Acc:F4KDH9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.