Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 1
- cytosol 3
- plastid 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
25464976
nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g021760.2.1 | |
| Solyc02g070240.2.1 | |
| Solyc07g005320.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25550.1 | Solyc02g021760.2.1 | AT1G30460.1 | 18479511 |
| AT4G25550.1 | Solyc02g070240.2.1 | AT1G30460.1 | 18479511 |
| AT4G25550.1 | Solyc07g005320.2.1 | AT5G58040.1 | 18479511 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g009620.2.1 | Tomato | nucleus | 96.5 | 96.5 |
| KRH35335 | Soybean | cytosol | 34.0 | 93.15 |
| PGSC0003DMT400084196 | Potato | peroxisome | 31.0 | 92.54 |
| Solyc03g025880.2.1 | Tomato | nucleus | 90.0 | 90.0 |
| KRG91493 | Soybean | endoplasmic reticulum, nucleus | 90.0 | 90.0 |
| VIT_16s0050g00030.t01 | Wine grape | cytosol, plastid | 87.0 | 87.0 |
| CDX92717 | Canola | cytosol | 86.0 | 86.0 |
| Bra019155.1-P | Field mustard | cytosol | 85.5 | 85.5 |
| CDY50198 | Canola | cytosol | 85.5 | 85.5 |
| Bra013899.1-P | Field mustard | cytosol | 85.0 | 85.0 |
| CDX89414 | Canola | cytosol | 85.0 | 85.0 |
| CDY52363 | Canola | cytosol | 85.0 | 85.0 |
| CDY54086 | Canola | cytosol | 85.0 | 85.0 |
| AT4G25550.1 | Thale cress | cytosol | 85.0 | 85.0 |
| TraesCS1B01G366600.1 | Wheat | cytosol | 85.0 | 83.74 |
| HORVU2Hr1G124110.1 | Barley | cytosol | 85.0 | 83.74 |
| TraesCS1D01G355400.1 | Wheat | cytosol | 85.0 | 83.74 |
| TraesCS2A01G580600.1 | Wheat | nucleus | 85.0 | 83.74 |
| TraesCS2B01G608100.1 | Wheat | cytosol | 85.0 | 83.74 |
| TraesCS2D01G592500.2 | Wheat | cytosol | 85.0 | 83.74 |
| TraesCS1A01G355100.1 | Wheat | cytosol | 85.0 | 83.74 |
| HORVU1Hr1G081030.2 | Barley | cytosol | 39.5 | 74.53 |
| CDX94441 | Canola | cytosol | 84.0 | 71.19 |
| GSMUA_AchrUn_... | Banana | plastid | 24.5 | 55.06 |
| HORVU0Hr1G001450.1 | Barley | plastid | 47.0 | 51.93 |
| Solyc07g041000.2.1 | Tomato | cytosol | 48.0 | 47.52 |
| Bra010457.1-P | Field mustard | cytosol | 85.0 | 43.26 |
Protein Annotations
| MapMan:16.2.1.4.1 | Gene3D:3.90.79.10 | InterPro:Cleav_polyA_spec_factor_su5 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0005849 | GO:GO:0006139 | GO:GO:0006378 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | UniProt:K4ATF8 | PFAM:PF13869 | PIRSF:PIRSF017888 | PANTHER:PTHR13047 | EnsemblPlantsGene:Solyc01g009630.2 |
| EnsemblPlants:Solyc01g009630.2.1 | UniParc:UPI0002763734 | : | : | : | : |
Description
No Description!
Coordinates
chr1:+:3865190..3874083
Molecular Weight (calculated)
22940.0 Da
IEP (calculated)
9.762
GRAVY (calculated)
-0.394
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSAIVNTY PLSSYTFGTK EHKMEKDTSV ADRLARMKVN YMKEGVRTSV EGILLVQEHN HPHILLLQIG NTFCKLPGGR LKPGENEIEG LKRKLSSKLA
101: ANPPANQPNW KIGECIATWW RPNFETIMYP YCPPHITKPK ECKKLYLVHL SEREYFAVPK NLKLLAVPLF ELYDNVQRYG PVISTIPQQL SRLQFNMINQ
101: ANPPANQPNW KIGECIATWW RPNFETIMYP YCPPHITKPK ECKKLYLVHL SEREYFAVPK NLKLLAVPLF ELYDNVQRYG PVISTIPQQL SRLQFNMINQ
001: MAMSQVVNTY PLSNYSFGTK EPKLEKDTSV ADRLARMKIN YMKEGMRTSV EGILLVQEHN HPHILLLQIG NTFCKLPGGR LKPGENEADG LKRKLTSKLG
101: GNSAALVPDW TVGECVATWW RPNFETMMYP YCPPHITKPK ECKRLYIVHL SEKEYFAVPK NLKLLAVPLF ELYDNVQRYG PVISTIPQQL SRFHFNMISS
101: GNSAALVPDW TVGECVATWW RPNFETMMYP YCPPHITKPK ECKRLYIVHL SEKEYFAVPK NLKLLAVPLF ELYDNVQRYG PVISTIPQQL SRFHFNMISS
Arabidopsis Description
CFIS2Pre-mRNA cleavage factor Im 25 kDa subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXS3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.