Factsheet for GSMUA_AchrUn_randomP05180_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 1
plastid 3
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P14570_001
GSMUA_Achr6P19820_001
GSMUA_Achr7P27630_001
GSMUA_Achr9P30440_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25550.1	GSMUA_Achr6P19820_001	AT1G30460.1	18479511
AT4G25550.1	GSMUA_Achr9P30440_001	AT1G30460.1	18479511
AT4G25550.1	GSMUA_Achr4P14570_001	AT5G58040.1	18479511
AT4G25550.1	GSMUA_Achr7P27630_001	AT5G58040.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400084196	Potato	peroxisome	34.83	46.27
PGSC0003DMT400037076	Potato	cytosol, plastid	53.93	42.11
GSMUA_Achr9P20560_001	Banana	cytosol	55.06	27.68
GSMUA_Achr2P03900_001	Banana	cytosol	60.67	27.0
Solyc03g025880.2.1	Tomato	nucleus	58.43	26.0
KRG91493	Soybean	endoplasmic reticulum, nucleus	58.43	26.0
GSMUA_Achr1P17490_001	Banana	unclear	58.43	26.0
Solyc01g009620.2.1	Tomato	nucleus	56.18	25.0
Solyc01g009630.2.1	Tomato	nucleus	55.06	24.5
CDY50198	Canola	cytosol	55.06	24.5
CDX92717	Canola	cytosol	55.06	24.5
Bra019155.1-P	Field mustard	cytosol	55.06	24.5
AT4G25550.1	Thale cress	cytosol	53.93	24.0
VIT_16s0050g00030.t01	Wine grape	cytosol, plastid	52.81	23.5
CDY54086	Canola	cytosol	51.69	23.0
CDY52363	Canola	cytosol	51.69	23.0
CDX89414	Canola	cytosol	50.56	22.5
Bra013899.1-P	Field mustard	cytosol	50.56	22.5
VIT_15s0046g03350.t01	Wine grape	cytosol	58.43	22.13
CDX94441	Canola	cytosol	49.44	18.64
GSMUA_Achr3P26260_001	Banana	cytosol	35.96	14.88
Bra010457.1-P	Field mustard	cytosol	51.69	11.7
KRH35335	Soybean	cytosol	3.37	4.11
PGSC0003DMT400037077	Potato	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.90.79.10	MapMan:35.1	InterPro:Cleav_polyA_spec_factor_su5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005849	GO:GO:0006139	GO:GO:0006378	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSMUA_AchrUn_randomG05180_001	EnsemblPlants:GSMUA_AchrUn_randomP05180_001	EnsemblPlants:GSMUA_AchrUn_randomT05180_001
UniProt:M0U6I0	PFAM:PF13869	PANTHER:PTHR13047	TMHMM:TMhelix	UniParc:UPI000294E2D2	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG05180_001]

Coordinates

chrchrUn_random:+:20578703..20580072

Molecular Weight (calculated)

10571.0 Da

IEP (calculated)

9.615

GRAVY (calculated)

0.126

Length

89 amino acids

Sequence
(BLAST)

1: MVTSSVVYTY PLSNYTFESK ERKMEKDASV LDRLARMKVN YMKQGMRTSV EGILLVKIDT LFRYFSVFWL YFIFSGLCEA HIAIYWTIK

Best Arabidopsis Sequence Match ( AT4G25550.1 )
(BLAST)

001: MAMSQVVNTY PLSNYSFGTK EPKLEKDTSV ADRLARMKIN YMKEGMRTSV EGILLVQEHN HPHILLLQIG NTFCKLPGGR LKPGENEADG LKRKLTSKLG
101: GNSAALVPDW TVGECVATWW RPNFETMMYP YCPPHITKPK ECKRLYIVHL SEKEYFAVPK NLKLLAVPLF ELYDNVQRYG PVISTIPQQL SRFHFNMISS

Arabidopsis Description

CFIS2Pre-mRNA cleavage factor Im 25 kDa subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.