Factsheet for PGSC0003DMT400037076

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400008250
PGSC0003DMT400054373

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25550.1	PGSC0003DMT400054373	AT1G30460.1	18479511
AT4G25550.1	PGSC0003DMT400008250	AT5G58040.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400084196	Potato	peroxisome	52.63	89.55
Solyc03g025880.2.1	Tomato	nucleus	96.49	55.0
GSMUA_AchrUn_...	Banana	plastid	42.11	53.93
HORVU0Hr1G001450.1	Barley	plastid	83.33	52.49
VIT_16s0050g00030.t01	Wine grape	cytosol, plastid	89.47	51.0
KRG91493	Soybean	endoplasmic reticulum, nucleus	89.47	51.0
HORVU2Hr1G124110.1	Barley	cytosol	87.72	49.26
TraesCS2D01G592500.2	Wheat	cytosol	87.72	49.26
TraesCS2B01G608100.1	Wheat	cytosol	87.72	49.26
TraesCS2A01G580600.1	Wheat	nucleus	87.72	49.26
CDX92717	Canola	cytosol	85.09	48.5
CDY50198	Canola	cytosol	84.21	48.0
Bra019155.1-P	Field mustard	cytosol	84.21	48.0
TraesCS1D01G355400.1	Wheat	cytosol	84.21	47.29
TraesCS1A01G355100.1	Wheat	cytosol	84.21	47.29
TraesCS1B01G366600.1	Wheat	cytosol	84.21	47.29
AT4G25550.1	Thale cress	cytosol	81.58	46.5
CDY52363	Canola	cytosol	80.7	46.0
Bra013899.1-P	Field mustard	cytosol	80.7	46.0
CDX89414	Canola	cytosol	80.7	46.0
CDY54086	Canola	cytosol	80.7	46.0
CDX94441	Canola	cytosol	78.95	38.14
PGSC0003DMT400046377	Potato	cytosol	44.74	25.25
Bra010457.1-P	Field mustard	cytosol	80.7	23.41
HORVU1Hr1G081030.2	Barley	cytosol	3.51	3.77
PGSC0003DMT400037077	Potato	cytosol	0.88	1.61
KRH35335	Soybean	cytosol	0.88	1.37

Protein Annotations

MapMan:16.2.1.4.1	Gene3D:3.90.79.10	InterPro:Cleav_polyA_spec_factor_su5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005849	GO:GO:0006139	GO:GO:0006378	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	UniProt:M1B4S2	PFAM:PF13869	EnsemblPlantsGene:PGSC0003DMG401014290	PGSC:PGSC0003DMG401014290	EnsemblPlants:PGSC0003DMT400037076
PANTHER:PTHR13047	UniParc:UPI000294BEDA	:	:	:	:

Description

Pre-mRNA cleavage factor im, 25kD subunit [Source:PGSC_GENE;Acc:PGSC0003DMG401014290]

Coordinates

chr3:+:42850702..42855082

Molecular Weight (calculated)

12668.4 Da

IEP (calculated)

9.860

GRAVY (calculated)

-0.404

Length

114 amino acids

Sequence
(BLAST)

001: MVTSSVVNTY PLSSYTFGTK EPKMEKDTSV ADRLARMKVN YTKEGMRTSV EGILLVQEHN HPHILLLQIG NTFCKLPGGR LKPGENEIEG LKRKLSSKLA
101: ANSPGIQPNW QVCL

Best Arabidopsis Sequence Match ( AT4G25550.1 )
(BLAST)

001: MAMSQVVNTY PLSNYSFGTK EPKLEKDTSV ADRLARMKIN YMKEGMRTSV EGILLVQEHN HPHILLLQIG NTFCKLPGGR LKPGENEADG LKRKLTSKLG
101: GNSAALVPDW TVGECVATWW RPNFETMMYP YCPPHITKPK ECKRLYIVHL SEKEYFAVPK NLKLLAVPLF ELYDNVQRYG PVISTIPQQL SRFHFNMISS

Arabidopsis Description

CFIS2Pre-mRNA cleavage factor Im 25 kDa subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.