Factsheet for HORVU0Hr1G001450.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G009390.7
HORVU7Hr1G106340.5

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25550.1	HORVU7Hr1G106340.5	AT1G30460.1	18479511
AT4G25550.1	HORVU4Hr1G009390.7	AT5G58040.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400084196	Potato	peroxisome	33.15	89.55
PGSC0003DMT400037076	Potato	cytosol, plastid	52.49	83.33
GSMUA_Achr9P20560_001	Banana	cytosol	55.8	57.06
TraesCS1D01G355400.1	Wheat	cytosol	63.54	56.65
TraesCS1A01G355100.1	Wheat	cytosol	63.54	56.65
TraesCS1B01G366600.1	Wheat	cytosol	62.98	56.16
HORVU2Hr1G124110.1	Barley	cytosol	61.33	54.68
GSMUA_Achr1P17490_001	Banana	unclear	55.8	50.5
GSMUA_Achr2P03900_001	Banana	cytosol	55.25	50.0
Solyc03g025880.2.1	Tomato	nucleus	52.49	47.5
KRG91493	Soybean	endoplasmic reticulum, nucleus	52.49	47.5
VIT_16s0050g00030.t01	Wine grape	cytosol, plastid	51.93	47.0
Solyc01g009630.2.1	Tomato	nucleus	51.93	47.0
Solyc01g009620.2.1	Tomato	nucleus	51.93	47.0
CDY50198	Canola	cytosol	50.83	46.0
Bra019155.1-P	Field mustard	cytosol	50.83	46.0
CDX92717	Canola	cytosol	50.28	45.5
CDY54086	Canola	cytosol	49.72	45.0
CDY52363	Canola	cytosol	49.72	45.0
CDX89414	Canola	cytosol	49.17	44.5
Bra013899.1-P	Field mustard	cytosol	49.17	44.5
AT4G25550.1	Thale cress	cytosol	49.17	44.5
VIT_15s0046g03350.t01	Wine grape	cytosol	55.25	42.55
CDX94441	Canola	cytosol	50.83	38.98
Bra010457.1-P	Field mustard	cytosol	49.72	22.9
HORVU7Hr1G078670.4	Barley	plastid	32.6	22.87
HORVU1Hr1G081030.2	Barley	cytosol	2.76	4.72
PGSC0003DMT400037077	Potato	cytosol	0.55	1.61
KRH35335	Soybean	cytosol	0.55	1.37

Protein Annotations

MapMan:16.2.1.4.1	Gene3D:3.90.79.10	UniProt:A0A287DUD0	InterPro:Cleav_polyA_spec_factor_su5	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005849	GO:GO:0006139	GO:GO:0006378
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	EnsemblPlantsGene:HORVU0Hr1G001450	EnsemblPlants:HORVU0Hr1G001450.1
InterPro:NUDIX_hydrolase-like_dom_sf	PFAM:PF13869	PANTHER:PTHR13047	SUPFAM:SSF55811	UniParc:UPI000B48330F	SEG:seg

Description

No Description!

Coordinates

chrchrUn:+:7514888..7516723

Molecular Weight (calculated)

19648.6 Da

IEP (calculated)

10.303

GRAVY (calculated)

-0.780

Length

181 amino acids

Sequence
(BLAST)

001: LRKKAQMGLG QGRPTPTNRN SPDPRSKSPH HPPPPPPPPP PPPPATTGSG EERGSARPSE AGEEMVGAPS SPVVNVYPLA NYTFGTKEAK MEKDTSVADR
101: LARMKVNYMK EGMRTSVEAI LLVQEHNHPH ILLLQIGNTF CKLPGGRLKP GESEIEGLKR KLCSKLAVNS PSFPPNWQLT Q

Best Arabidopsis Sequence Match ( AT4G25550.1 )
(BLAST)

001: MAMSQVVNTY PLSNYSFGTK EPKLEKDTSV ADRLARMKIN YMKEGMRTSV EGILLVQEHN HPHILLLQIG NTFCKLPGGR LKPGENEADG LKRKLTSKLG
101: GNSAALVPDW TVGECVATWW RPNFETMMYP YCPPHITKPK ECKRLYIVHL SEKEYFAVPK NLKLLAVPLF ELYDNVQRYG PVISTIPQQL SRFHFNMISS

Arabidopsis Description

CFIS2Pre-mRNA cleavage factor Im 25 kDa subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.