Factsheet for HORVU7Hr1G106340.5

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G001450.1
HORVU0Hr1G029140.2
HORVU0Hr1G035930.1
HORVU1Hr1G081030.2
HORVU2Hr1G011580.28
HORVU2Hr1G016100.3
HORVU2Hr1G124110.1
HORVU3Hr1G013370.4
HORVU4Hr1G009390.7
HORVU4Hr1G052840.1
HORVU5Hr1G060570.5
HORVU5Hr1G060590.1
HORVU5Hr1G095960.3
HORVU5Hr1G109220.1
HORVU7Hr1G069840.2
HORVU7Hr1G106340.5

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30460.1	HORVU3Hr1G013370.4	AT1G17760.1	18479511
AT1G30460.1	HORVU7Hr1G106340.5	AT1G30460.1	18479511
AT1G30460.1	HORVU7Hr1G069840.2	AT1G66500.1	18479511
AT1G30460.1	HORVU5Hr1G060570.5	AT2G01730.1	16897494
AT1G30460.1	HORVU5Hr1G060590.1	AT2G01730.1	16897494
AT1G30460.1	HORVU0Hr1G029140.2	AT3G06560.1	16897494
AT1G30460.1	HORVU0Hr1G035930.1	AT3G06560.1	16897494
AT1G30460.1	HORVU2Hr1G016100.3	AT3G06560.1	16897494
AT1G30460.1	HORVU4Hr1G052840.1	AT3G06560.1	16897494
AT1G30460.1	HORVU0Hr1G029140.2	AT3G06560.1	18479511
AT1G30460.1	HORVU0Hr1G035930.1	AT3G06560.1	18479511
AT1G30460.1	HORVU2Hr1G016100.3	AT3G06560.1	18479511
AT1G30460.1	HORVU4Hr1G052840.1	AT3G06560.1	18479511
AT1G30460.1	HORVU7Hr1G069840.2	AT4G04885.1	18479511
AT1G30460.1	HORVU0Hr1G001450.1	AT4G25550.1	18479511
AT1G30460.1	HORVU1Hr1G081030.2	AT4G25550.1	18479511
AT1G30460.1	HORVU2Hr1G124110.1	AT4G25550.1	18479511
AT1G30460.1	HORVU5Hr1G109220.1	AT5G23880.1	16897494
AT1G30460.1	HORVU5Hr1G109220.1	AT5G23880.1	18479511
AT1G30460.1	HORVU2Hr1G011580.28	AT5G51660.1	16897494
AT1G30460.1	HORVU2Hr1G011580.28	AT5G51660.1	18479511
AT1G30460.1	HORVU4Hr1G009390.7	AT5G58040.1	16282318
AT1G30460.1	HORVU4Hr1G009390.7	AT5G58040.1	18479511
AT1G30460.1	HORVU5Hr1G095960.3	AT5G60940.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G461800.1	Wheat	nucleus	95.69	95.54
TraesCS7D01G450100.1	Wheat	nucleus	95.38	95.23
TraesCS7B01G363200.2	Wheat	nucleus	95.07	94.49
EER88812	Sorghum	cytosol, nucleus, peroxisome	83.82	84.34
Zm00001d014378_P001	Maize	cytosol, nucleus, peroxisome	82.13	83.28
Os06t0677700-00	Rice	cytosol, nucleus, plasma membrane	87.67	82.94
Zm00001d036594_P001	Maize	cytosol, nucleus, peroxisome	78.89	79.13
Zm00001d014379_P001	Maize	nucleus	28.66	75.61
Zm00001d036595_P001	Maize	nucleus	28.66	74.1
GSMUA_Achr6P19820_001	Banana	nucleus	65.95	61.85
GSMUA_Achr9P30440_001	Banana	nucleus	60.25	59.51
KRH36762	Soybean	nucleus	60.71	57.86
KRH11760	Soybean	nucleus	61.48	57.74
VIT_10s0003g04600.t01	Wine grape	nucleus	59.63	57.5
CDX98205	Canola	nucleus	47.61	56.8
AT1G30460.1	Thale cress	nucleus	54.85	56.42
Solyc02g070240.2.1	Tomato	nucleus	57.32	55.44
Bra014881.1-P	Field mustard	nucleus	48.23	53.97
Bra010767.1-P	Field mustard	nucleus	52.23	53.81
Solyc02g021760.2.1	Tomato	nucleus	56.86	53.56
CDX77591	Canola	nucleus	48.07	52.44
CDY12057	Canola	cytosol, nucleus, peroxisome	51.0	50.46
HORVU0Hr1G015410.3	Barley	cytosol	6.47	20.39

Protein Annotations

MapMan:16.2.1.2.5	Gene3D:3.10.590.10	Gene3D:4.10.1000.10	UniProt:A0A287XP34	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519
GO:GO:0004521	GO:GO:0005488	GO:GO:0005515	GO:GO:0005516	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006378	GO:GO:0006396
GO:GO:0006950	GO:GO:0006979	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0008219	GO:GO:0009719	GO:GO:0009987	GO:GO:0016787	GO:GO:0031124	GO:GO:0034052
GO:GO:0043068	GO:GO:0046872	GO:GO:1900363	GO:GO:2000031	EnsemblPlantsGene:HORVU7Hr1G106340	EnsemblPlants:HORVU7Hr1G106340.5
InterPro:IPR000571	InterPro:IPR007275	PFAM:PF04146	PFscan:PS50103	PFscan:PS50882	PANTHER:PTHR12357
PANTHER:PTHR12357:SF59	SMART:SM00356	SUPFAM:SSF90229	UniParc:UPI000B47641D	InterPro:YTH_domain	InterPro:Znf_CCCH
InterPro:Znf_CCCH_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr7H:+:619229152..619233833

Molecular Weight (calculated)

70766.9 Da

IEP (calculated)

7.008

GRAVY (calculated)

-0.954

Length

649 amino acids

Sequence
(BLAST)

001: DGDGGLSFDF EGGLDTGPAA GGLAPSSADA GGTGGGGPDG GGXXGGGHGR GRGRGSYRQT VCRHWLRGLC MKGDACGFLH QFDKARMPVC RFFRDYGECR
101: EPDCAYKHSY DDVKECNMYK MGFCPNGPNC RYKHVKLPGP PPPVEEVLAK ILQMRSSNFN KFNQHRNNNY NQQGDRPRPP PASGLPNQNS TDNATASAMQ
201: PAAGQQAQTM NQQPQQKQQQ VQQQKPNTND QVQGVPNGSS NQPTRLATPL PQGSSRYFIV KSCNRENLEI SVQQGIWATQ RSNEAKLNEA FESMDNVILI
301: FSINRTRNFQ GCAKMTSRIG GYIGGGNWKS ANGTAHYGRN FSLQWLKLCE LSFQKTHHLR NPYNDNLPVK ISRDCQELEP FIGEQLASLL YLEPDSELTA
401: MLVAAEAKRE EEKAKGVSAD EAADNQDIVL FEDNEEEEEE ESEEEDENNG QESQGRGRGR GMMWPPQMQM PRGPMMGPRG FPPNMMGDGF GGGFGFGMPD
501: PFGMPRGFPP FGGPRFPDFP RGPMPGMVFP GRPPQPGMFP MGLEMMMGPG RGPLGMGMGG PGRPNRPIGM APFMPPPPPR PVKRDQRRPG GDRYETGSDQ
601: GSRGHDNNAG NSGADGNRSQ SGDRFGRSAF RDDDSESDEE AAPRRSRKR

Best Arabidopsis Sequence Match ( AT1G30460.1 )
(BLAST)

001: MEDADGLSFD FEGGLDSGPV QNTASVPVAP PENSSSAAVN VAPTYDHSSA TVAGAGRGRS FRQTVCRHWL RGLCMKGDAC GFLHQFDKAR MPICRFFRLY
101: GECREQDCVY KHTNEDIKEC NMYKLGFCPN GPDCRYRHAK LPGPPPPVEE VLQKIQQLTT YNYGTNRLYQ ARNVAPQLQD RPQGQVPMQG QPQESGNLQQ
201: QQQQQPQQSQ HQVSQTLIPN PADQTNRTSH PLPQGVNRYF VVKSNNRENF ELSVQQGVWA TQRSNEAKLN EAFDSVENVI LIFSVNRTRH FQGCAKMTSR
301: IGGYIGGGNW KHEHGTAQYG RNFSVKWLKL CELSFHKTRN LRNPYNENLP VKISRDCQEL EPSVGEQLAS LLYLEPDSEL MAISIAAEAK REEEKAKGVN
401: PESRAENPDI VPFEDNEEEE EEEDESEEEE ESMAGGPQGR GRGRGIMWPP QMPLGRGIRP MPGMGGFPLG VMGPGDAFPY GPGGYNGMPD PFGMGPRPFG
501: PYGPRFGGDF RGPVPGMMFP GRPPQQFPHG GYGMMGGGRG PHMGGMGNAP RGGRPMYYPP ATSSARPGPS NRKTPERSDE RGVSGDQQNQ DASHDMEQFE
601: VGNSLRNEES ESEDEDEAPR RSRHGEGKKR R

Arabidopsis Description

CPSF3030-kDa cleavage and polyadenylation specificity factor 30 [Source:UniProtKB/Swiss-Prot;Acc:A9LNK9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.