Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d014379_P001 | Maize | nucleus | 94.02 | 95.94 |
| PGSC0003DMT400054373 | Potato | cytosol, nucleus, plastid | 43.82 | 41.35 |
| Zm00001d036594_P001 | Maize | cytosol, nucleus, peroxisome | 98.41 | 38.18 |
| EER88812 | Sorghum | cytosol, nucleus, peroxisome | 93.63 | 36.43 |
| Zm00001d014378_P001 | Maize | cytosol, nucleus, peroxisome | 92.43 | 36.25 |
| TraesCS7D01G450100.1 | Wheat | nucleus | 76.1 | 29.38 |
| TraesCS7A01G461800.1 | Wheat | nucleus | 76.1 | 29.38 |
| Os06t0677700-00 | Rice | cytosol, nucleus, plasma membrane | 79.68 | 29.15 |
| TraesCS7B01G363200.2 | Wheat | nucleus | 75.3 | 28.94 |
| HORVU7Hr1G106340.5 | Barley | cytosol | 74.1 | 28.66 |
| KRH36762 | Soybean | nucleus | 56.18 | 20.7 |
| KRH11760 | Soybean | nucleus | 54.58 | 19.83 |
| GSMUA_Achr9P30440_001 | Banana | nucleus | 51.79 | 19.79 |
| Solyc02g070240.2.1 | Tomato | nucleus | 52.19 | 19.52 |
| GSMUA_Achr6P19820_001 | Banana | nucleus | 53.78 | 19.51 |
| VIT_10s0003g04600.t01 | Wine grape | nucleus | 52.19 | 19.47 |
| CDX98205 | Canola | nucleus | 40.24 | 18.57 |
| AT1G30460.1 | Thale cress | nucleus | 46.22 | 18.38 |
| Bra010767.1-P | Field mustard | nucleus | 43.82 | 17.46 |
| Solyc02g021760.2.1 | Tomato | nucleus | 47.41 | 17.27 |
| Bra014881.1-P | Field mustard | nucleus | 39.44 | 17.07 |
| CDY12057 | Canola | cytosol, nucleus, peroxisome | 44.22 | 16.92 |
| CDX77591 | Canola | nucleus | 38.65 | 16.3 |
Protein Annotations
| EnsemblPlants:Zm00001d036595_P001 | EnsemblPlants:Zm00001d036595_T001 | EnsemblPlantsGene:Zm00001d036595 | Gene3D:4.10.1000.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0046872 | InterPro:IPR000571 | InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf | PANTHER:PTHR12357 | PANTHER:PTHR12357:SF59 |
| PFscan:PS50103 | ProteinID:AQK81458.1 | SEG:seg | SMART:SM00356 | SUPFAM:SSF90229 | UniParc:UPI000182BEE9 |
| UniProt:A0A1D6LPN1 | MapMan:16.2.1.2.5 | : | : | : | : |
Description
30-kDa cleavage and polyadenylation specificity factor 30
Coordinates
chr6:-:93934409..93936181
Molecular Weight (calculated)
27294.7 Da
IEP (calculated)
8.104
GRAVY (calculated)
-0.946
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDSDGGLSF DFEGGLDSAP ASGGGGPVPS STDPGAGVGG GGDGLGMHGR GRGRGSYRQT VCRHWLRGLC MKGEACGFLH QFDKARMPVC RFFRDFGECR
101: EPDCAYKHSY DDVKECNMYK MGFCPNGPNC RYKHIKLPGP PPSVEEVLQK ILQMRSFNRY SQNRNNNYNH QGERPQHPQG SGLPNQNSAE NATAVDPPAG
201: GQQAQTLNQQ PPQQQQKPNT NDQAQGVSNG HQATRIATPL PQGPSRCVWS F
101: EPDCAYKHSY DDVKECNMYK MGFCPNGPNC RYKHIKLPGP PPSVEEVLQK ILQMRSFNRY SQNRNNNYNH QGERPQHPQG SGLPNQNSAE NATAVDPPAG
201: GQQAQTLNQQ PPQQQQKPNT NDQAQGVSNG HQATRIATPL PQGPSRCVWS F
001: MEDADGLSFD FEGGLDSGPV QNTASVPVAP PENSSSAAVN VAPTYDHSSA TVAGAGRGRS FRQTVCRHWL RGLCMKGDAC GFLHQFDKAR MPICRFFRLY
101: GECREQDCVY KHTNEDIKEC NMYKLGFCPN GPDCRYRHAK LPGPPPPVEE VLQKIQQLTT YNYGTNRLYQ ARNVAPQLQD RPQGQVPMQG QPQESGNLQQ
201: QQQQQPQQSQ HQVSQTLIPN PADQTNRTSH PLPQGVNRYF VVKSNNRENF ELSVQQGVWA TQRSNEAKLN EAFDSVENVI LIFSVNRTRH FQGCAKMTSR
301: IGGYIGGGNW KHEHGTAQYG RNFSVKWLKL CELSFHKTRN LRNPYNENLP VKISRDCQEL EPSVGEQLAS LLYLEPDSEL MVYTLSPTLS RCCLTLFFHG
401: S
101: GECREQDCVY KHTNEDIKEC NMYKLGFCPN GPDCRYRHAK LPGPPPPVEE VLQKIQQLTT YNYGTNRLYQ ARNVAPQLQD RPQGQVPMQG QPQESGNLQQ
201: QQQQQPQQSQ HQVSQTLIPN PADQTNRTSH PLPQGVNRYF VVKSNNRENF ELSVQQGVWA TQRSNEAKLN EAFDSVENVI LIFSVNRTRH FQGCAKMTSR
301: IGGYIGGGNW KHEHGTAQYG RNFSVKWLKL CELSFHKTRN LRNPYNENLP VKISRDCQEL EPSVGEQLAS LLYLEPDSEL MVYTLSPTLS RCCLTLFFHG
401: S
Arabidopsis Description
CPSF3030-kDa cleavage and polyadenylation specificity factor 30 [Source:UniProtKB/Swiss-Prot;Acc:A9LNK9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.