Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU80002 | Sorghum | nucleus | 87.14 | 87.96 |
| Zm00001d049442_P009 | Maize | nucleus | 87.76 | 87.49 |
| Os08t0187700-01 | Rice | cytosol | 67.84 | 67.35 |
| TraesCS7A01G294500.5 | Wheat | nucleus | 63.8 | 65.92 |
| TraesCS7D01G290300.2 | Wheat | nucleus | 62.86 | 65.02 |
| TraesCS7B01G181900.3 | Wheat | nucleus | 63.59 | 61.42 |
| HORVU7Hr1G069840.2 | Barley | plastid | 62.03 | 60.9 |
| VIT_18s0086g00630.t01 | Wine grape | cytosol | 4.36 | 60.0 |
| VIT_18s0086g00620.t01 | Wine grape | extracellular | 5.81 | 40.88 |
| GSMUA_Achr6P18930_001 | Banana | nucleus | 31.33 | 36.74 |
| Bra004171.1-P | Field mustard | nucleus | 8.51 | 36.61 |
| Bra029526.1-P | Field mustard | nucleus, plastid | 26.56 | 33.16 |
| CDY16640 | Canola | nucleus | 26.45 | 32.95 |
| VIT_10s0116g00720.t01 | Wine grape | nucleus | 32.78 | 32.81 |
| CDX94585 | Canola | nucleus | 25.73 | 32.63 |
| KRH35569 | Soybean | cytosol | 31.02 | 32.43 |
| AT4G04885.1 | Thale cress | nucleus | 26.66 | 31.81 |
| Solyc12g094490.1.1 | Tomato | nucleus | 31.64 | 31.28 |
| KRG91241 | Soybean | nucleus | 30.39 | 31.27 |
| PGSC0003DMT400075619 | Potato | nucleus | 31.54 | 31.15 |
| KRH35574 | Soybean | nucleus | 12.97 | 31.02 |
| CDX96143 | Canola | nucleus | 11.0 | 25.85 |
| CDY36205 | Canola | nucleus | 11.1 | 25.6 |
| AT5G43620.1 | Thale cress | nucleus | 10.06 | 23.66 |
| AT1G66500.1 | Thale cress | nucleus | 9.65 | 22.36 |
| Zm00001d019856_P005 | Maize | plastid | 20.02 | 17.48 |
| Zm00001d005350_P005 | Maize | plastid | 20.02 | 16.62 |
Protein Annotations
| EnsemblPlants:Zm00001d000023_P004 | EnsemblPlants:Zm00001d000023_T004 | EnsemblPlantsGene:Zm00001d000023 | EntrezGene:100280286 | Gene3D:1.25.40.90 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | InterPro:CID_dom | InterPro:ENTH_VHS | InterPro:IPR006569 | InterPro:IPR008942 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_type | PANTHER:PTHR15921 | PFscan:PS51391 | ScanProsite:PS00028 | SEG:seg |
| SMART:SM00582 | SUPFAM:SSF48464 | UniParc:UPI0004DE9CC2 | UniProt:A0A1D6DPQ4 | MapMan:16.2.1.5.2 | : |
Description
Polyadenylation and cleavage factor homolog 5
Coordinates
chrB73V4_ctg150:-:1548564..1563268
Molecular Weight (calculated)
105966.0 Da
IEP (calculated)
7.094
GRAVY (calculated)
-0.557
Length
964 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGAAASPVA AHVVERFRSR LREEAGSGEP GASAVVRLYA EALRELTFNC KPVITELTIV AGQHAALAAG GIAGAVCARV AEVPPDQILP SLYLLDSIVK
101: NIGGEYVEHF AIRLQSVFVD AYYRVHPNQY ASMRRLFRTW WPVFPSSVLH SIEDDLQFSP SENNRPTTST NVHQTESLSP RPSHGIHVNP KYLEAQHKFK
201: RVNVAHQSAA QDTRQMSDVQ EDLINGLTSN SSQGRPSVFQ KSSLQYADDP GQQEMFRPLA GAIRATSPHL LRTHASDVNL DGPLANSRRN LSRSPPLDVF
301: PRNVSPKRPL ERLPPSHSVL GPDPRKLPDR NGRLRWALDD GAQWPTISML DEEYRKQSAR ELIDAYGNCQ GRDADERLPK VQRLDSNGMT SKSGARNWLT
401: SEEEYSWEDM SPTLTDRVRS SMPSFPPGTM RIGFPGANAG LLESDVGRHN FLSQATRSSV DVSPFNIEDR ISAASHVDIS TRRYPSNFGV QNGALLEYQN
501: SEHTLNHGRI ATMPAPPWQQ PIGLPLRIQG PEHPSVLGRI PQPVDGEMPV KRLDISGTYN GLNVDKPLVK HRSSPAPAPT EWLPLHHAQS QTLPLIPPDT
601: KHVRSASDSL EISSFVSHGG SSSVFVPRHQ YDAVDRKTGT SNLAQPPSPY QNQDLLPSSQ QNQGTILGNQ AHPHRPLKLH PHAHPHHQET FRSFAPGMSV
701: SPFQGQGGNA TMTPVSVLPT SFSVPPAVPP YGVLSAPGFP MPPLPPGPPA PVSLQMGSSS SQVGGPQPFV SGLLSNLMRH GVISLEPPSQ SQDSVGVDFN
801: VDLKVRNESV TNALYQDLPR QCKTCGLRFK CQEEHRAHMD WHVTKNRNSK NRKKSSRKYF VTAVEWLRAA ETVGNDGVPA FVLSDPVPDR QEEKEIAVPA
901: DEEQTSCALC QEPFEDFYSD ETDEWMYRGA VYMNAPDGNI DGLEWSQLGP IVHAKCRSGP GNTS
101: NIGGEYVEHF AIRLQSVFVD AYYRVHPNQY ASMRRLFRTW WPVFPSSVLH SIEDDLQFSP SENNRPTTST NVHQTESLSP RPSHGIHVNP KYLEAQHKFK
201: RVNVAHQSAA QDTRQMSDVQ EDLINGLTSN SSQGRPSVFQ KSSLQYADDP GQQEMFRPLA GAIRATSPHL LRTHASDVNL DGPLANSRRN LSRSPPLDVF
301: PRNVSPKRPL ERLPPSHSVL GPDPRKLPDR NGRLRWALDD GAQWPTISML DEEYRKQSAR ELIDAYGNCQ GRDADERLPK VQRLDSNGMT SKSGARNWLT
401: SEEEYSWEDM SPTLTDRVRS SMPSFPPGTM RIGFPGANAG LLESDVGRHN FLSQATRSSV DVSPFNIEDR ISAASHVDIS TRRYPSNFGV QNGALLEYQN
501: SEHTLNHGRI ATMPAPPWQQ PIGLPLRIQG PEHPSVLGRI PQPVDGEMPV KRLDISGTYN GLNVDKPLVK HRSSPAPAPT EWLPLHHAQS QTLPLIPPDT
601: KHVRSASDSL EISSFVSHGG SSSVFVPRHQ YDAVDRKTGT SNLAQPPSPY QNQDLLPSSQ QNQGTILGNQ AHPHRPLKLH PHAHPHHQET FRSFAPGMSV
701: SPFQGQGGNA TMTPVSVLPT SFSVPPAVPP YGVLSAPGFP MPPLPPGPPA PVSLQMGSSS SQVGGPQPFV SGLLSNLMRH GVISLEPPSQ SQDSVGVDFN
801: VDLKVRNESV TNALYQDLPR QCKTCGLRFK CQEEHRAHMD WHVTKNRNSK NRKKSSRKYF VTAVEWLRAA ETVGNDGVPA FVLSDPVPDR QEEKEIAVPA
901: DEEQTSCALC QEPFEDFYSD ETDEWMYRGA VYMNAPDGNI DGLEWSQLGP IVHAKCRSGP GNTS
001: MASNGSFSAQ RNANARTTMK RRSDNRGYGG GIGGYQEETN RYAPPQKRFR SQAQQQFRSG HNPLYHHHGS NNNNVSRVSS QSYNNCGVDV IASNSSFALR
101: NNDSNTNNYQ KPFVAGYGNP NPQIVPLPLP YRKLDDNLSL DSLPDWVPNS RTLTPNYPVR SSNFVPNTPV FTNVQNPMNH SNMVSVVSQS MHQPIVLSKE
201: LTDLLSLLNN EKEKKTLEAS NSDSLPVGLS FDNPSSLNVR HESVIKSLYS DMPRQCSSCG LRFKCQEEHS KHMDWHVRKN RSVKTTTRLG QQPKKSRGWL
301: ASASLWLCAA TGGETVEVAS FGGEMQKKKG KDEEPKQLMV PADEDQKNCA LCVEPFEEFF SHEDDDWMYK DAVYLTKNGR IVHVKCMPEP RPAKDLREPS
401: RVMSVTVPSV AKAIAC
101: NNDSNTNNYQ KPFVAGYGNP NPQIVPLPLP YRKLDDNLSL DSLPDWVPNS RTLTPNYPVR SSNFVPNTPV FTNVQNPMNH SNMVSVVSQS MHQPIVLSKE
201: LTDLLSLLNN EKEKKTLEAS NSDSLPVGLS FDNPSSLNVR HESVIKSLYS DMPRQCSSCG LRFKCQEEHS KHMDWHVRKN RSVKTTTRLG QQPKKSRGWL
301: ASASLWLCAA TGGETVEVAS FGGEMQKKKG KDEEPKQLMV PADEDQKNCA LCVEPFEEFF SHEDDDWMYK DAVYLTKNGR IVHVKCMPEP RPAKDLREPS
401: RVMSVTVPSV AKAIAC
Arabidopsis Description
PCFS1Polyadenylation and cleavage factor homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C710]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.