Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G294500.5 | Wheat | nucleus | 97.64 | 97.53 |
| TraesCS7B01G181900.3 | Wheat | nucleus | 97.53 | 91.08 |
| HORVU7Hr1G069840.2 | Barley | plastid | 92.7 | 87.98 |
| Os08t0187700-01 | Rice | cytosol | 71.89 | 69.0 |
| OQU80002 | Sorghum | nucleus | 65.67 | 64.08 |
| Zm00001d000023_P004 | Maize | nucleus | 65.02 | 62.86 |
| Zm00001d049442_P009 | Maize | nucleus | 65.13 | 62.77 |
| VIT_18s0086g00630.t01 | Wine grape | cytosol | 4.51 | 60.0 |
| GSMUA_Achr6P18930_001 | Banana | nucleus | 32.4 | 36.74 |
| VIT_18s0086g00620.t01 | Wine grape | extracellular | 5.36 | 36.5 |
| Bra029526.1-P | Field mustard | nucleus, plastid | 29.83 | 36.01 |
| CDX94585 | Canola | nucleus | 29.29 | 35.92 |
| CDY16640 | Canola | nucleus | 29.51 | 35.53 |
| Bra004171.1-P | Field mustard | nucleus | 8.37 | 34.82 |
| AT4G04885.1 | Thale cress | nucleus | 30.15 | 34.78 |
| KRH35569 | Soybean | cytosol | 32.19 | 32.54 |
| VIT_10s0116g00720.t01 | Wine grape | nucleus | 33.37 | 32.29 |
| KRG91241 | Soybean | nucleus | 32.19 | 32.02 |
| PGSC0003DMT400075619 | Potato | nucleus | 33.48 | 31.97 |
| Solyc12g094490.1.1 | Tomato | nucleus | 33.15 | 31.69 |
| KRH35574 | Soybean | nucleus | 12.98 | 30.02 |
| CDX96143 | Canola | nucleus | 10.73 | 24.39 |
| CDY36205 | Canola | nucleus | 10.84 | 24.16 |
| AT5G43620.1 | Thale cress | nucleus | 10.52 | 23.9 |
| AT1G66500.1 | Thale cress | nucleus | 10.19 | 22.84 |
| TraesCS4D01G010100.1 | Wheat | plastid | 24.14 | 22.55 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G290300.2 | EnsemblPlantsGene:TraesCS7D01G290300 | Gene3D:1.25.40.90 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:CID_dom | InterPro:ENTH_VHS | InterPro:IPR006569 | InterPro:IPR008942 | InterPro:IPR013087 | InterPro:RNA_pol_II-bd |
| InterPro:Znf_C2H2_type | PANTHER:PTHR15921 | PFAM:PF04818 | PFscan:PS51391 | ScanProsite:PS00028 | SEG:seg |
| SMART:SM00582 | SUPFAM:SSF48464 | TIGR:cd03562 | MapMan:16.2.1.5.2 | : | : |
Description
No Description!
Coordinates
chr7D:+:339779232..339786473
Molecular Weight (calculated)
103307.0 Da
IEP (calculated)
7.123
GRAVY (calculated)
-0.631
Length
932 amino acids
Sequence
(BLAST)
(BLAST)
001: MASAAAAAPV VGQVVERFRA RLREEAGEEP GAAAVVGVYK EALAELTFNC KPIITELTII AGQHAALAAR GIADAICARI LEVPVEQKLP SLYLLDSIVK
101: NIGQEYVEDF ATRLQKVFCF AYREVHPKQH PAMRHLFRTW SQVFPSSVLQ GIEDELQFSP SENKRPATTT IPRQSESLSP RPSHGIHVNP KYLEAQHQLK
201: NGTKVDQLAT RGRQMLDVAE DHINGLTTNS LRGFPSTSSK LQRSMILYTE NPDQQETFQS RIGLIRRDMS RSPPPDVLPR NASPKRPLEM PRLSHSALGH
301: DPRRLPGRNG WFERQRAFED SAQRPSMSTL DEEYRKQSAR ELIDAYGNSQ GNGADDRLPK MQRLESNGMA SRSSAQKWLT SEEEEYTWED MRPTLSRNRN
401: NIPSLPSSET LGAGFPGPNT GQLDSDIGMR SWRSQAPRPA LNLEDRTDHV DIATSRRYPG NFGLHNGAIS EYHSSVNTLD PGRILAMSAP PWQQTNGLPL
501: RIQAPQPSST LNRLALPTDV EMPVKMLATG GPYDAMHVDL PLTNRSSPAP APIEWPLHHS QPPHNTKDIR GATDSLEVRP FIRHGVNSSV FVPRHLYDAL
601: DRKTVSTGNL AQPPYQHPDL LSSSQQNQGT NFGNQSQPHD VPQFHPHSHS HPPEAFRSFA PSMPIAPPQN PFQGQGGSAA VPPVTPLPNT FSVTPTVQPY
701: GVSSVSSFAL PPLHRGLPPA SLQMGPSSSQ VGGPTTYFSG ILSNLMNHGV ITLEPSSQPQ DSVGVDFNVD LKVRNESVIN ALYQDLHRQC KTCGLRFKCQ
801: EEHRAHMDWH VTKNRNSKNR KQSSRKYFVT VGEWLRAAET VGNDGVPSFE LTEPIPDRNE EKEMAVPADE NQTTCALCQE PFEDFYSDET EEWMYKGAVY
901: MNAPDGNIVG LQRSHLGPIV HSKCRSGPSN IS
101: NIGQEYVEDF ATRLQKVFCF AYREVHPKQH PAMRHLFRTW SQVFPSSVLQ GIEDELQFSP SENKRPATTT IPRQSESLSP RPSHGIHVNP KYLEAQHQLK
201: NGTKVDQLAT RGRQMLDVAE DHINGLTTNS LRGFPSTSSK LQRSMILYTE NPDQQETFQS RIGLIRRDMS RSPPPDVLPR NASPKRPLEM PRLSHSALGH
301: DPRRLPGRNG WFERQRAFED SAQRPSMSTL DEEYRKQSAR ELIDAYGNSQ GNGADDRLPK MQRLESNGMA SRSSAQKWLT SEEEEYTWED MRPTLSRNRN
401: NIPSLPSSET LGAGFPGPNT GQLDSDIGMR SWRSQAPRPA LNLEDRTDHV DIATSRRYPG NFGLHNGAIS EYHSSVNTLD PGRILAMSAP PWQQTNGLPL
501: RIQAPQPSST LNRLALPTDV EMPVKMLATG GPYDAMHVDL PLTNRSSPAP APIEWPLHHS QPPHNTKDIR GATDSLEVRP FIRHGVNSSV FVPRHLYDAL
601: DRKTVSTGNL AQPPYQHPDL LSSSQQNQGT NFGNQSQPHD VPQFHPHSHS HPPEAFRSFA PSMPIAPPQN PFQGQGGSAA VPPVTPLPNT FSVTPTVQPY
701: GVSSVSSFAL PPLHRGLPPA SLQMGPSSSQ VGGPTTYFSG ILSNLMNHGV ITLEPSSQPQ DSVGVDFNVD LKVRNESVIN ALYQDLHRQC KTCGLRFKCQ
801: EEHRAHMDWH VTKNRNSKNR KQSSRKYFVT VGEWLRAAET VGNDGVPSFE LTEPIPDRNE EKEMAVPADE NQTTCALCQE PFEDFYSDET EEWMYKGAVY
901: MNAPDGNIVG LQRSHLGPIV HSKCRSGPSN IS
001: MDSEKILNPR LVSINSTSRK GMSVELPQKP PPPPSLLDRF KALLNQREDE FGGGEEVLPP SMDEIVQLYE VVLGELTFNS KPIITDLTII AGEQREHGEG
101: IANAICTRIL EAPVEQKLPS LYLLDSIVKN IGRDYGRYFS SRLPEVFCLA YRQAHPSLHP SMRHLFGTWS SVFPPPVLRK IDMQLQLSSA ANQSSVGASE
201: PSQPTRGIHV NPKYLRRLEP SAAENNLRGI NSSARVYGQN SLGGYNDFED QLESPSSLSS TPDGFTRRSN DGANPSNQAF NYGMGRATSR DDEHMEWRRK
301: ENLGQGNDHE RPRALIDAYG VDTSKHVTIN KPIRDMNGMH SKMVTPWQNT EEEEFDWEDM SPTLDRSRAG EFLRSSVPAL GSVRARPRVG NTSDFHLDSD
401: IKNGVSHQLR ENWSLSQNYP HTSNRVDTRA GKDLKVLASS VGLVSSNSEF GAPPFDSIQD VNSRFGRALP DGTWPHLSAR GPNSLPVPSA HLHHLANPGN
501: AMSNRLQGKP LYRPENQVSQ SHLNDMTQQN QMLVNYLPSS SAMAPRPMQS LLTHVSHGYP PHGSTIRPSL SIQGGEAMHP LSSGVLSQIG ASNQPPGGAF
601: SGLIGSLMAQ GLISLNNQPA GQGPLGLEFD ADMLKIRNES AISALYGDLP RQCTTCGLRF KCQEEHSKHM DWHVTKNRMS KNHKQNPSRK WFVSASMWLS
701: GAEALGAEAV PGFLPTEPTT EKKDDEDMAV PADEDQTSCA LCGEPFEDFY SDETEEWMYK GAVYMNAPEE STTDMDKSQL GPIVHAKCRP ESNGGDMEEG
801: SQRKKMRS
101: IANAICTRIL EAPVEQKLPS LYLLDSIVKN IGRDYGRYFS SRLPEVFCLA YRQAHPSLHP SMRHLFGTWS SVFPPPVLRK IDMQLQLSSA ANQSSVGASE
201: PSQPTRGIHV NPKYLRRLEP SAAENNLRGI NSSARVYGQN SLGGYNDFED QLESPSSLSS TPDGFTRRSN DGANPSNQAF NYGMGRATSR DDEHMEWRRK
301: ENLGQGNDHE RPRALIDAYG VDTSKHVTIN KPIRDMNGMH SKMVTPWQNT EEEEFDWEDM SPTLDRSRAG EFLRSSVPAL GSVRARPRVG NTSDFHLDSD
401: IKNGVSHQLR ENWSLSQNYP HTSNRVDTRA GKDLKVLASS VGLVSSNSEF GAPPFDSIQD VNSRFGRALP DGTWPHLSAR GPNSLPVPSA HLHHLANPGN
501: AMSNRLQGKP LYRPENQVSQ SHLNDMTQQN QMLVNYLPSS SAMAPRPMQS LLTHVSHGYP PHGSTIRPSL SIQGGEAMHP LSSGVLSQIG ASNQPPGGAF
601: SGLIGSLMAQ GLISLNNQPA GQGPLGLEFD ADMLKIRNES AISALYGDLP RQCTTCGLRF KCQEEHSKHM DWHVTKNRMS KNHKQNPSRK WFVSASMWLS
701: GAEALGAEAV PGFLPTEPTT EKKDDEDMAV PADEDQTSCA LCGEPFEDFY SDETEEWMYK GAVYMNAPEE STTDMDKSQL GPIVHAKCRP ESNGGDMEEG
801: SQRKKMRS
Arabidopsis Description
PCFS4Polyadenylation and cleavage factor homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPF2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.