Factsheet for VIT_10s0116g00720.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_10s0003g04600.t01
VIT_10s0116g00720.t01
VIT_18s0086g00620.t01
VIT_18s0086g00630.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04885.1	VIT_10s0003g04600.t01	AT1G30460.1	18479511
AT4G04885.1	VIT_18s0086g00620.t01	AT1G66500.1	18479511
AT4G04885.1	VIT_18s0086g00630.t01	AT1G66500.1	18479511
AT4G04885.1	VIT_10s0116g00720.t01	AT4G04885.1	18479511
AT4G04885.1	VIT_18s0086g00620.t01	AT5G43620.1	18479511
AT4G04885.1	VIT_18s0086g00630.t01	AT5G43620.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0086g00630.t01	Wine grape	cytosol	6.23	85.71
VIT_18s0086g00620.t01	Wine grape	extracellular	9.35	65.69
CDY16640	Canola	nucleus	36.45	45.35
KRG91241	Soybean	nucleus	43.93	45.14
KRH35569	Soybean	cytosol	42.99	44.9
Bra029526.1-P	Field mustard	nucleus, plastid	35.93	44.82
CDX94585	Canola	nucleus	34.89	44.21
AT4G04885.1	Thale cress	nucleus	36.86	43.94
KRH35574	Soybean	nucleus	17.55	41.94
GSMUA_Achr6P18930_001	Banana	nucleus	34.68	40.63
PGSC0003DMT400075619	Potato	nucleus	40.81	40.27
Solyc12g094490.1.1	Tomato	nucleus	40.39	39.9
Os08t0187700-01	Rice	cytosol	34.99	34.71
TraesCS7D01G290300.2	Wheat	nucleus	32.29	33.37
TraesCS7A01G294500.5	Wheat	nucleus	32.19	33.23
Zm00001d049442_P009	Maize	nucleus	33.23	33.09
OQU80002	Sorghum	nucleus	32.81	33.09
Zm00001d000023_P004	Maize	nucleus	32.81	32.78
HORVU7Hr1G069840.2	Barley	plastid	32.92	32.28
TraesCS7B01G181900.3	Wheat	nucleus	32.29	31.16
VIT_08s0007g03880.t01	Wine grape	nucleus	25.55	22.69

Protein Annotations

Gene3D:1.25.40.90	MapMan:16.2.1.5.2	ProteinID:CCB48172	ProteinID:CCB48172.1	InterPro:CID_dom	ncoils:Coil
InterPro:ENTH_VHS	UniProt:F6H7L4	EMBL:FN595248	GO:GO:0000993	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005737	GO:GO:0005849	GO:GO:0006139
GO:GO:0006369	GO:GO:0006378	GO:GO:0006379	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR006569	InterPro:IPR008942	InterPro:IPR013087	PFAM:PF04818	ScanProsite:PS00028
PFscan:PS51391	PANTHER:PTHR15921	InterPro:RNA_pol_II-bd	SMART:SM00582	SUPFAM:SSF48464	TIGR:TC65706
UniParc:UPI0002108729	ArrayExpress:VIT_10s0116g00720	EnsemblPlantsGene:VIT_10s0116g00720	EnsemblPlants:VIT_10s0116g00720.t01	InterPro:Znf_C2H2_type	SEG:seg

Description

No Description!

Coordinates

chr10:-:317577..328078

Molecular Weight (calculated)

105600.0 Da

IEP (calculated)

7.329

GRAVY (calculated)

-0.601

Length

963 amino acids

Sequence
(BLAST)

001: MDGDRFVVSA RENPRTLGFA PERGPGGSAT ATAKPMSNEI SQKPLVPIVD RFKALLKQRE DELRVLSGDD VPPPTTEEIV RLYEIVLSEL IFNSKPIITD
101: LTIIAGDHKE HADGIADAIC ARIVEVSVEQ KLPSLYLLDS IVKNIGRDYI KHFSSRLPEV FCEAYRQVHP NLYTAMRHLF GTWSAVFPPS VLRKIEAQLQ
201: FSPTLNNQSS GMASLRASES PRPTHSIHVN PKYLEARHQF EHSPVDSNMQ HSRGTSSTLK VYGQKPAIGY DEYDSGHTEV ISSQARAQRL NSTGSVGRTP
301: FALGADKLLP SSTARVAKST SPRIGTAGSS SPPAEKFSMD NSPRRVVERA SPSHRGFEYG LVRSMGRDEE TSDRQRKHWS NDRFETSAAH NLSNGRERQG
401: LRALIDAYGN DRGQRTLNDK PPKVGHLDMN GTDNKVPKKA WQNTEEEEYD WEDMNPTLAN RRQCNNILQS SVSPFGSFRT RPGSGALGAA PLESDFNRSK
501: WSGQAQLSMV DDSPVIAEDV VPTTSLGRGS ISKPGFGNET KFHGSHYPQE SWNLVHRVPQ SSQHNRNAKG RGKNFNTPFL GSGISSSAAE TISPLISNIP
601: DADAQLRRLP TVASRMGSSS LNSMNVESLF LPELDSKLPQ MANRQAGSIP LNGKNQTQVT RLQPQFLPQE THGNFVPSTT APVSSYSVAP PLNPGYTPQG
701: HAAATSTILL NPVPGVHSSI PIHNISNSSN TGPIVSNQQP GSALSGLISS LMAQGLISLA KQPTVQDSVG IEFNVDLLKV RHESAISALY GDMSRQCTTC
801: GLRFKCQEEH SSHMDWHVTK NRISKNRKQK PSRKWFVSAS MWLSSAEALG TDAVPGFLPT ETIAEKKDDE ELAVPADEDQ NVCALCGEPF DDFYSDETEE
901: WMYKGAVYLN APEGSAAGMD RSQLGPIVHA KCRSESNVVS PEDFGQDEGG NMEEGSKRKR MRR

Best Arabidopsis Sequence Match ( AT4G04885.1 )
(BLAST)

001: MDSEKILNPR LVSINSTSRK GMSVELPQKP PPPPSLLDRF KALLNQREDE FGGGEEVLPP SMDEIVQLYE VVLGELTFNS KPIITDLTII AGEQREHGEG
101: IANAICTRIL EAPVEQKLPS LYLLDSIVKN IGRDYGRYFS SRLPEVFCLA YRQAHPSLHP SMRHLFGTWS SVFPPPVLRK IDMQLQLSSA ANQSSVGASE
201: PSQPTRGIHV NPKYLRRLEP SAAENNLRGI NSSARVYGQN SLGGYNDFED QLESPSSLSS TPDGFTRRSN DGANPSNQAF NYGMGRATSR DDEHMEWRRK
301: ENLGQGNDHE RPRALIDAYG VDTSKHVTIN KPIRDMNGMH SKMVTPWQNT EEEEFDWEDM SPTLDRSRAG EFLRSSVPAL GSVRARPRVG NTSDFHLDSD
401: IKNGVSHQLR ENWSLSQNYP HTSNRVDTRA GKDLKVLASS VGLVSSNSEF GAPPFDSIQD VNSRFGRALP DGTWPHLSAR GPNSLPVPSA HLHHLANPGN
501: AMSNRLQGKP LYRPENQVSQ SHLNDMTQQN QMLVNYLPSS SAMAPRPMQS LLTHVSHGYP PHGSTIRPSL SIQGGEAMHP LSSGVLSQIG ASNQPPGGAF
601: SGLIGSLMAQ GLISLNNQPA GQGPLGLEFD ADMLKIRNES AISALYGDLP RQCTTCGLRF KCQEEHSKHM DWHVTKNRMS KNHKQNPSRK WFVSASMWLS
701: GAEALGAEAV PGFLPTEPTT EKKDDEDMAV PADEDQTSCA LCGEPFEDFY SDETEEWMYK GAVYMNAPEE STTDMDKSQL GPIVHAKCRP ESNGGDMEEG
801: SQRKKMRS

Arabidopsis Description

PCFS4Polyadenylation and cleavage factor homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPF2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.