CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77591
CDX94585
CDX96143
CDX98205
CDY12057
CDY16640
CDY36205

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04885.1	CDX77591	AT1G30460.1	18479511
AT4G04885.1	CDX98205	AT1G30460.1	18479511
AT4G04885.1	CDY12057	AT1G30460.1	18479511
AT4G04885.1	CDX96143	AT1G66500.1	18479511
AT4G04885.1	CDY36205	AT1G66500.1	18479511
AT4G04885.1	CDX94585	AT4G04885.1	18479511
AT4G04885.1	CDY16640	AT4G04885.1	18479511
AT4G04885.1	CDX96143	AT5G43620.1	18479511
AT4G04885.1	CDY36205	AT5G43620.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16640	Canola	nucleus	96.58	94.83
Bra029526.1-P	Field mustard	nucleus, plastid	95.66	94.17
AT4G04885.1	Thale cress	nucleus	70.92	66.71
KRH35569	Soybean	cytosol	43.16	35.57
PGSC0003DMT400075619	Potato	nucleus	45.0	35.04
KRG91241	Soybean	nucleus	43.03	34.9
VIT_10s0116g00720.t01	Wine grape	nucleus	44.21	34.89
Solyc12g094490.1.1	Tomato	nucleus	44.34	34.56
GSMUA_Achr6P18930_001	Banana	nucleus	37.37	34.55
KRH35574	Soybean	nucleus	17.89	33.75
TraesCS7D01G290300.2	Wheat	nucleus	35.92	29.29
TraesCS7A01G294500.5	Wheat	nucleus	35.92	29.26
Os08t0187700-01	Rice	cytosol	36.45	28.53
HORVU7Hr1G069840.2	Barley	plastid	36.84	28.51
TraesCS7B01G181900.3	Wheat	nucleus	35.92	27.35
CDY33157	Canola	nucleus	6.05	27.06
OQU80002	Sorghum	nucleus	33.29	26.49
Zm00001d049442_P009	Maize	nucleus	33.42	26.27
Zm00001d000023_P004	Maize	nucleus	32.63	25.73
CDY36205	Canola	nucleus	12.76	23.21
CDX96143	Canola	nucleus	12.37	22.93
CDY33156	Canola	nucleus	21.18	19.54
CDX75035	Canola	nucleus	24.87	18.66
CDY69913	Canola	nucleus	14.08	14.92

Protein Annotations

Gene3D:1.25.40.90	MapMan:16.2.1.5.2	GO:A0A078DZ18	EnsemblPlants:CDX94585	ProteinID:CDX94585	ProteinID:CDX94585.1
InterPro:CID_dom	InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00157868001
InterPro:IPR006569	InterPro:IPR008942	InterPro:IPR013087	PFAM:PF04818	ScanProsite:PS00028	PFscan:PS51391
PANTHER:PTHR15921	InterPro:RNA_pol_II-bd	SMART:SM00582	SUPFAM:SSF48464	UniParc:UPI0004EE4556	InterPro:Znf_C2H2_type
SEG:seg	:	:	:	:	:

Description

BnaC09g22510D

Coordinates

chrLK031882:+:1388060..1391204

Molecular Weight (calculated)

83086.7 Da

IEP (calculated)

6.350

GRAVY (calculated)

-0.516

Length

760 amino acids

Sequence
(BLAST)

001: MQSEKIINPS LLLGTTTGRK SMSVVKPPPP PSILDRFKAL LNQREDEFGG EDPSSEEVVQ LYEVVLGELT FNSKPIITDL TIIADEQREH GEGIANAICT
101: RILEAPVEQK LPSLYLLDSI VKNIGRDYAR YFSSRLPEVF CLAYRQAHPS LHPSMRHLFG TWSGVFPSPV LRKIEMQLKL TSATNSQSSL GASEPTQPTR
201: GIHVNPKYLR RLEPSAAESN LRGISSSAKV YSQNSVGGYD DFEDQLDSPS SLAGPRSITA GTLTLASSAI GADGFPRRFS DGVNSSNQAY NYGMGRATGR
301: DDEHMDWRRK ENFGQGNDHE RPRALIDAYG VDTSKHTSIS RPIRNVNGIH SKMVTPWQNT EEEEFDWEDM SPTLERSRAG EFLRSSVPAL GSVRPRPRLG
401: NIHDFQLDSD IKNGMNSRFG RGPAMISRVG PSGADALPDG TWPHLGVRGS NSLPVPSAHV HHLANPGNAM LNHLNGKPLY RPENQVSHMT QQSQVLGNYL
501: PSSSAMAPRA MQSLLPHGHG YPPLGSTIRP SLSVHGGEAM HPHSSGVSIS QNPSLGASNQ PPGGAFSGLI GSLMAQGLIS LNNQPTGQGA SVMEFDADML
601: KIRNESAITA LYGDLPRQCT TCGLRFKSQE EHSKHMDWHV TKNRMSKNHK QKPSRKWFVS GSMWLSGAEA LGAEAVPGFL PVEPTTEKKD DEEMAVPADE
701: DQTSCALCGE PFEDFYSDET EEWMYKGAVY MNAPDGSTTD VDKSLLGNIF NLEVSVLVFG

Best Arabidopsis Sequence Match ( AT4G04885.1 )
(BLAST)

001: MDSEKILNPR LVSINSTSRK GMSVELPQKP PPPPSLLDRF KALLNQREDE FGGGEEVLPP SMDEIVQLYE VVLGELTFNS KPIITDLTII AGEQREHGEG
101: IANAICTRIL EAPVEQKLPS LYLLDSIVKN IGRDYGRYFS SRLPEVFCLA YRQAHPSLHP SMRHLFGTWS SVFPPPVLRK IDMQLQLSSA ANQSSVGASE
201: PSQPTRGIHV NPKYLRRLEP SAAENNLRGI NSSARVYGQN SLGGYNDFED QLESPSSLSS TPDGFTRRSN DGANPSNQAF NYGMGRATSR DDEHMEWRRK
301: ENLGQGNDHE RPRALIDAYG VDTSKHVTIN KPIRDMNGMH SKMVTPWQNT EEEEFDWEDM SPTLDRSRAG EFLRSSVPAL GSVRARPRVG NTSDFHLDSD
401: IKNGVSHQLR ENWSLSQNYP HTSNRVDTRA GKDLKVLASS VGLVSSNSEF GAPPFDSIQD VNSRFGRALP DGTWPHLSAR GPNSLPVPSA HLHHLANPGN
501: AMSNRLQGKP LYRPENQVSQ SHLNDMTQQN QMLVNYLPSS SAMAPRPMQS LLTHVSHGYP PHGSTIRPSL SIQGGEAMHP LSSGVLSQIG ASNQPPGGAF
601: SGLIGSLMAQ GLISLNNQPA GQGPLGLEFD ADMLKIRNES AISALYGDLP RQCTTCGLRF KCQEEHSKHM DWHVTKNRMS KNHKQNPSRK WFVSASMWLS
701: GAEALGAEAV PGFLPTEPTT EKKDDEDMAV PADEDQTSCA LCGEPFEDFY SDETEEWMYK GAVYMNAPEE STTDMDKSQL GPIVHAKCRP ESNGGDMEEG
801: SQRKKMRS

Arabidopsis Description

PCFS4Polyadenylation and cleavage factor homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPF2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.