Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77591 | Canola | nucleus | 82.9 | 75.8 |
| CDY52193 | Canola | nucleus | 25.0 | 75.56 |
| AT1G30460.1 | Thale cress | nucleus | 84.74 | 73.06 |
| CDY12057 | Canola | cytosol, nucleus, peroxisome | 77.94 | 64.63 |
| CDX90251 | Canola | nucleus | 25.92 | 62.39 |
| KRH36762 | Soybean | nucleus | 65.99 | 52.72 |
| KRH11760 | Soybean | nucleus | 65.81 | 51.81 |
| VIT_10s0003g04600.t01 | Wine grape | nucleus | 63.6 | 51.41 |
| Solyc02g070240.2.1 | Tomato | nucleus | 62.68 | 50.82 |
| GSMUA_Achr9P30440_001 | Banana | nucleus | 60.29 | 49.92 |
| Solyc02g021760.2.1 | Tomato | nucleus | 62.87 | 49.64 |
| Zm00001d014378_P001 | Maize | cytosol, nucleus, peroxisome | 57.9 | 49.22 |
| EER88812 | Sorghum | cytosol, nucleus, peroxisome | 57.72 | 48.68 |
| GSMUA_Achr6P19820_001 | Banana | nucleus | 61.21 | 48.12 |
| Zm00001d036594_P001 | Maize | cytosol, nucleus, peroxisome | 56.8 | 47.76 |
| HORVU7Hr1G106340.5 | Barley | cytosol | 56.8 | 47.61 |
| TraesCS7D01G450100.1 | Wheat | nucleus | 56.8 | 47.54 |
| TraesCS7A01G461800.1 | Wheat | nucleus | 56.62 | 47.38 |
| TraesCS7B01G363200.2 | Wheat | nucleus | 56.62 | 47.17 |
| Os06t0677700-00 | Rice | cytosol, nucleus, plasma membrane | 57.9 | 45.92 |
| Zm00001d014379_P001 | Maize | nucleus | 18.57 | 41.06 |
| Zm00001d036595_P001 | Maize | nucleus | 18.57 | 40.24 |
| CDY47426 | Canola | nucleus | 17.1 | 26.42 |
| CDY04384 | Canola | nucleus | 16.73 | 26.3 |
Protein Annotations
| MapMan:16.2.1.2.5 | Gene3D:3.10.590.10 | Gene3D:4.10.1000.10 | GO:A0A078E7X6 | EnsemblPlants:CDX98205 | ProteinID:CDX98205 |
| ProteinID:CDX98205.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0046872 |
| EnsemblPlantsGene:GSBRNA2T00105668001 | InterPro:IPR000571 | InterPro:IPR007275 | PFAM:PF04146 | PFscan:PS50103 | PFscan:PS50882 |
| PANTHER:PTHR12357 | PANTHER:PTHR12357:SF59 | SMART:SM00356 | SUPFAM:SSF90229 | UniParc:UPI0004EEAA24 | InterPro:YTH_domain |
| InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf | SEG:seg | : | : | : |
Description
BnaC07g08930D
Coordinates
chrLK031903:-:724071..728329
Molecular Weight (calculated)
59795.2 Da
IEP (calculated)
6.671
GRAVY (calculated)
-0.832
Length
544 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDADGLSFD FEGGLDSGPV HPTASVPVAP PENSSSAAVN LTPSYDHSSA TVPGAGRGRG FRQTVCRHWL RGLCMKAEAC GFLHQYDKAR MPICRFFRLH
101: GECREQDCVY KHTNADIKEC NMYKLGFCPN GSDCRYRHAK LSGPPPPVEE TQGQPQESGN LQQQQPQQTQ HQVSQTQTPN PAEQTSHAHP LPRGVNRYFV
201: VKSCNLENFE LSVQRGVWAT QRSNEAKLNE AFDSVANVIL IFSVNRTRHF QGCAKMTSRI GVKWLKLCEL SFHKTRNLRN PYNENLPVKI SRDCQELEPS
301: VGEELASLLY LEPDSDLMAI SIAAEAKREE EKAKGVNPES RAENPDIVPF EDNEEEEEDD DESEEEEDGM ANGPQGRGRG RGMMWPPQMP LGRGIRPMPG
401: MGGFPLGVMA PSDAFPYGPG GYNGMPDPFG MGGPRPFGPR FGGDFRGPVP GMMFPGRPPQ HFPRGGYGMM GRGPVMGGMG NAAPRGGGGR PMYHPPATTT
501: TSVRPASSNR RTPERSDDRG VASGSEDEDE APRRSRHGEG KKRR
101: GECREQDCVY KHTNADIKEC NMYKLGFCPN GSDCRYRHAK LSGPPPPVEE TQGQPQESGN LQQQQPQQTQ HQVSQTQTPN PAEQTSHAHP LPRGVNRYFV
201: VKSCNLENFE LSVQRGVWAT QRSNEAKLNE AFDSVANVIL IFSVNRTRHF QGCAKMTSRI GVKWLKLCEL SFHKTRNLRN PYNENLPVKI SRDCQELEPS
301: VGEELASLLY LEPDSDLMAI SIAAEAKREE EKAKGVNPES RAENPDIVPF EDNEEEEEDD DESEEEEDGM ANGPQGRGRG RGMMWPPQMP LGRGIRPMPG
401: MGGFPLGVMA PSDAFPYGPG GYNGMPDPFG MGGPRPFGPR FGGDFRGPVP GMMFPGRPPQ HFPRGGYGMM GRGPVMGGMG NAAPRGGGGR PMYHPPATTT
501: TSVRPASSNR RTPERSDDRG VASGSEDEDE APRRSRHGEG KKRR
001: MEDADGLSFD FEGGLDSGPV QNTASVPVAP PENSSSAAVN VAPTYDHSSA TVAGAGRGRS FRQTVCRHWL RGLCMKGDAC GFLHQFDKAR MPICRFFRLY
101: GECREQDCVY KHTNEDIKEC NMYKLGFCPN GPDCRYRHAK LPGPPPPVEE VLQKIQQLTT YNYGTNRLYQ ARNVAPQLQD RPQGQVPMQG QPQESGNLQQ
201: QQQQQPQQSQ HQVSQTLIPN PADQTNRTSH PLPQGVNRYF VVKSNNRENF ELSVQQGVWA TQRSNEAKLN EAFDSVENVI LIFSVNRTRH FQGCAKMTSR
301: IGGYIGGGNW KHEHGTAQYG RNFSVKWLKL CELSFHKTRN LRNPYNENLP VKISRDCQEL EPSVGEQLAS LLYLEPDSEL MAISIAAEAK REEEKAKGVN
401: PESRAENPDI VPFEDNEEEE EEEDESEEEE ESMAGGPQGR GRGRGIMWPP QMPLGRGIRP MPGMGGFPLG VMGPGDAFPY GPGGYNGMPD PFGMGPRPFG
501: PYGPRFGGDF RGPVPGMMFP GRPPQQFPHG GYGMMGGGRG PHMGGMGNAP RGGRPMYYPP ATSSARPGPS NRKTPERSDE RGVSGDQQNQ DASHDMEQFE
601: VGNSLRNEES ESEDEDEAPR RSRHGEGKKR R
101: GECREQDCVY KHTNEDIKEC NMYKLGFCPN GPDCRYRHAK LPGPPPPVEE VLQKIQQLTT YNYGTNRLYQ ARNVAPQLQD RPQGQVPMQG QPQESGNLQQ
201: QQQQQPQQSQ HQVSQTLIPN PADQTNRTSH PLPQGVNRYF VVKSNNRENF ELSVQQGVWA TQRSNEAKLN EAFDSVENVI LIFSVNRTRH FQGCAKMTSR
301: IGGYIGGGNW KHEHGTAQYG RNFSVKWLKL CELSFHKTRN LRNPYNENLP VKISRDCQEL EPSVGEQLAS LLYLEPDSEL MAISIAAEAK REEEKAKGVN
401: PESRAENPDI VPFEDNEEEE EEEDESEEEE ESMAGGPQGR GRGRGIMWPP QMPLGRGIRP MPGMGGFPLG VMGPGDAFPY GPGGYNGMPD PFGMGPRPFG
501: PYGPRFGGDF RGPVPGMMFP GRPPQQFPHG GYGMMGGGRG PHMGGMGNAP RGGRPMYYPP ATSSARPGPS NRKTPERSDE RGVSGDQQNQ DASHDMEQFE
601: VGNSLRNEES ESEDEDEAPR RSRHGEGKKR R
Arabidopsis Description
CPSF3030-kDa cleavage and polyadenylation specificity factor 30 [Source:UniProtKB/Swiss-Prot;Acc:A9LNK9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.