CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77591
CDX80392
CDX88053
CDX98205
CDY05277
CDY12057
CDY24682

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01730.1	CDX77591	AT1G30460.1	16897494
AT2G01730.1	CDX98205	AT1G30460.1	16897494
AT2G01730.1	CDY12057	AT1G30460.1	16897494
AT2G01730.1	CDY05277	AT3G06560.1	16897494
AT2G01730.1	CDY24682	AT3G06560.1	16897494
AT2G01730.1	CDX80392	AT5G23880.1	16897494
AT2G01730.1	CDX88053	AT5G23880.1	16897494
AT2G01730.1	CDX80392	AT5G23880.1	18479511
AT2G01730.1	CDX88053	AT5G23880.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026637.1-P	Field mustard	cytosol	99.67	99.67
CDY66642	Canola	cytosol	99.19	99.19
HORVU5Hr1G060590.1	Barley	cytosol	25.69	79.8
AT2G01730.1	Thale cress	cytoskeleton, cytosol, plasma membrane	76.59	76.84
VIT_01s0011g05780.t01	Wine grape	cytosol	10.41	68.09
KRH70353	Soybean	cytosol	56.59	65.41
TraesCS5D01G210400.1	Wheat	cytosol	53.17	59.24
TraesCS5A01G203800.1	Wheat	cytosol	53.17	59.24
HORVU5Hr1G060570.5	Barley	cytosol	53.01	58.32
Zm00001d044213_P001	Maize	cytosol	52.85	58.24
EES01080	Sorghum	cytosol	52.68	58.06
Os09t0397900-01	Rice	cytosol	52.68	57.96
TraesCS5B01G202500.1	Wheat	cytosol	42.93	57.52
Solyc04g008030.1.1	Tomato	cytosol	56.42	53.47
GSMUA_Achr3P07540_001	Banana	cytosol	49.43	46.13
PGSC0003DMT400075788	Potato	extracellular	17.24	30.11
CDY03781	Canola	cytosol	29.59	26.34
CDY68459	Canola	cytosol	29.59	26.22
CDX88053	Canola	cytosol	20.33	16.91
CDX80392	Canola	cytosol	20.33	16.91
CDY50214	Canola	cytosol	5.2	13.45

Protein Annotations

EnsemblPlants:CDY09421	EnsemblPlantsGene:GSBRNA2T00030913001	Gene3D:3.40.50.10890	Gene3D:3.60.15.10	InterPro:Beta_Casp	InterPro:IPR036866
InterPro:Metallo-B-lactamas	InterPro:RMMBL	InterPro:RibonucZ/Hydroxyglut_hydro	PANTHER:PTHR11203	PANTHER:PTHR11203:SF37	PFAM:PF07521
PFAM:PF10996	PFAM:PF16661	ProteinID:CDY09421	ProteinID:CDY09421.1	SMART:SM00849	SMART:SM01027
SUPFAM:SSF56281	UniParc:UPI0004EE6B24	UniProt:A0A078F7S9	MapMan:16.2.1.2.4	:	:

Description

BnaA02g25890DBnaA02g25890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F7S9]

Coordinates

chrLK031995:-:813576..816572

Molecular Weight (calculated)

68080.4 Da

IEP (calculated)

7.055

GRAVY (calculated)

-0.047

Length

615 amino acids

Sequence
(BLAST)

001: MAIDCLVLGA GQEIGKSCVV VTINGKKIMF DCGMHMGCDD HNRYPDFSIL SKSGDFDNTI SCLIITHFHM DHVGALPYFT EVCGYNGPVY MSYPTKALSP
101: LMLEDYRRIM VDRRGEEELF TSAHIASCMN KVIPLDLKQT IQVDEDLQIR AYYAGHVLGA VMVYAKVGDA AIVYTGDYNM TTDRHLGAAK IDRLQLDLLI
201: SESTYATTTR GSKYPREREF LQAVHKCVAG GGKALIPSFA LGRAQELCML LDDYWERMNI KVPIYFSSGL TIQANMYYKM LISWTSQNVK EKHVTHNPFD
301: FKNVKDFDRS LIHAPGPCVL FATPGMLCAG FSLEVFKHWA PSPLNLVALP GYSVAGTVGH KLMSGKPTTV DLYNGTKVDV RCKIHQVAFS PHTDAKGIMD
401: LTKFLSPKNI VLVHGEKPSM MSLKDKITSE LGIPCFVPAN GETVSVASTT FVKANASDMF LKICSNPNFR FSNSSTQLRV TDQRTADGVL VIEKSKKAKI
501: VHQDEVSEVL HEKDHVVSLA YCCPVKVKGE SDDVGLIKQL SEKISETVSC ADEIHESETC LQVGSFKSSL CLKEECVHRR GISSSCSEVK FLCCNWSVAD
601: LELGWGIINA MKQNL

Best Arabidopsis Sequence Match ( AT2G01730.1 )
(BLAST)

001: MAIDCLVLGA GQEIGKSCVV VTINGKKIMF DCGMHMGCDD HNRYPNFSLI SKSGDFDNAI SCIIITHFHM DHVGALPYFT EVCGYNGPIY MSYPTKALSP
101: LMLEDYRRVM VDRRGEEELF TTTHIANCMK KVIAIDLKQT IQVDEDLQIR AYYAGHVLGA VMVYAKMGDA AIVYTGDYNM TTDRHLGAAK IDRLQLDLLI
201: SESTYATTIR GSKYPREREF LQAVHKCVAG GGKALIPSFA LGRAQELCML LDDYWERMNI KVPIYFSSGL TIQANMYYKM LISWTSQNVK EKHNTHNPFD
301: FKNVKDFDRS LIHAPGPCVL FATPGMLCAG FSLEVFKHWA PSPLNLVALP GYSVAGTVGH KLMAGKPTTV DLYNGTKVDV RCKVHQVAFS PHTDAKGIMD
401: LTKFLSPKNV VLVHGEKPSM MILKEKITSE LDIPCFVPAN GETVSFASTT YIKANASDMF LKSCSNPNFK FSNSTQLRVT DHRTADGVLV IEKSKKAKIV
501: HQDEISEVLH EKNHVVSLAH CCPVKVKGES EDDDVDLIKQ LSAKILKTVS GAQIHESENC LQVASFKGSL CLKDKCMHRS SSSSSEAVFL CCNWSIADLE
601: LGWEIINAIK LNH

Arabidopsis Description

CPSF73-IICleavage and polyadenylation specificity factor subunit 3-II [Source:UniProtKB/Swiss-Prot;Acc:Q8GUU3]
SUBAcon: [plasma membrane,cytoskeleton,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.