Factsheet for PGSC0003DMT400075788

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
extracellular 4
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400011757
PGSC0003DMT400054373
PGSC0003DMT400074732

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01730.1	PGSC0003DMT400054373	AT1G30460.1	16897494
AT2G01730.1	PGSC0003DMT400011757	AT3G06560.1	16897494
AT2G01730.1	PGSC0003DMT400074732	AT3G06560.1	16897494

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g008030.1.1	Tomato	cytosol	89.2	48.38
TraesCS5B01G202500.1	Wheat	cytosol	31.25	23.97
KRH70353	Soybean	cytosol	32.95	21.8
EES01080	Sorghum	cytosol	33.81	21.33
Zm00001d044213_P001	Maize	cytosol	32.67	20.61
TraesCS5D01G210400.1	Wheat	cytosol	31.82	20.29
Os09t0397900-01	Rice	cytosol	32.1	20.21
TraesCS5A01G203800.1	Wheat	cytosol	31.25	19.93
HORVU5Hr1G060570.5	Barley	cytosol	30.97	19.5
AT2G01730.1	Thale cress	cytoskeleton, cytosol, plasma membrane	32.95	18.92
CDY66642	Canola	cytosol	30.11	17.24
CDY09421	Canola	cytosol	30.11	17.24
Bra026637.1-P	Field mustard	cytosol	30.11	17.24
GSMUA_Achr3P07540_001	Banana	cytosol	30.97	16.54
PGSC0003DMT400001821	Potato	cytosol	17.61	8.92
HORVU5Hr1G060590.1	Barley	cytosol	0.28	0.51
VIT_01s0011g05780.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400075788	EnsemblPlantsGene:PGSC0003DMG400029468	Gene3D:3.40.50.10890	InterPro:Beta_Casp	InterPro:IPR036866	InterPro:RMMBL
InterPro:RibonucZ/Hydroxyglut_hydro	PANTHER:PTHR11203	PANTHER:PTHR11203:SF37	PFAM:PF07521	PFAM:PF10996	PGSC:PGSC0003DMG400029468
SUPFAM:SSF56281	UniParc:UPI000296752D	UniProt:M1CVP6	MapMan:35.1	:	:

Description

Cleavage and polyadenylation specificity factor [Source:PGSC_GENE;Acc:PGSC0003DMG400029468]

Coordinates

chr4:-:2682200..2685293

Molecular Weight (calculated)

39526.7 Da

IEP (calculated)

6.767

GRAVY (calculated)

-0.302

Length

352 amino acids

Sequence
(BLAST)

001: MINAPGPCVL FATPGMLSGG FSLEVFKQWA PYEQNLIALP GYCLAETVGH KLMRAKPPAR IDVDKSTQID VRCQIHQLSF SPHTDSKGIM DLIRFLSPKN
101: VILVHGEKPK MASLKERIES DLRIPCYYPA NNESQCIEST QYIKAEASKS FLQSSLSPNF KFLKTISRAD TGFILNERAE SCIQVCDDRV AEGAVIMQKD
201: QHPKIVHQNE LMDILEAENH KVQVAYCCPV CVPNEPKNVA LSPGEDMHAV LDKRSLLHLL YTKLSNDFQD VTIQNDGDRL QIESLTVSPC PKEKCPHRRH
301: VNPVSTSEAV NFCCTWSMED EKLAWRVISI MKNLELKTSA HLELKKCSDE GS

Best Arabidopsis Sequence Match ( AT2G01730.2 )
(BLAST)

001: MDHVGALPYF TEVCGYNGPI YMSYPTKALS PLMLEDYRRV MVDRRGEEEL FTTTHIANCM KKVIAIDLKQ TIQVDEDLQI RAYYAGHVLG AVMVYAKMGD
101: AAIVYTGDYN MTTDRHLGAA KIDRLQLDLL ISESTYATTI RGSKYPRERE FLQAVHKCVA GGGKALIPSF ALGRAQELCM LLDDYWERMN IKVPIYFSSG
201: LTIQANMYYK MLISWTSQNV KEKHNTHNPF DFKNVKDFDR SLIHAPGPCV LFATPGMLCA GFSLEVFKHW APSPLNLVAL PGYSVAGTVG HKLMAGKPTT
301: VDLYNGTKVD VRCKVHQVAF SPHTDAKGIM DLTKFLSPKN VVLVHGEKPS MMILKEKITS ELDIPCFVPA NGETVSFAST TYIKANASDM FLKSCSNPNF
401: KFSNSTQLRV TDHRTADGVL VIEKSKKAKI VHQDEISEVL HEKNHVVSLA HCCPVKVKGE SEDDDVDLIK QLSAKILKTV SGAQIHESEN CLQVASFKGS
501: LCLKDKCMHR SSSSSSEAVF LCCNWSIADL ELGWEIINAI KLNH

Arabidopsis Description

CPSF73-IICleavage and polyadenylation specificity factor subunit 3-II [Source:UniProtKB/Swiss-Prot;Acc:Q8GUU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.