CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
extracellular 1
golgi 2
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88812
EER93127
KXG36988
OQU92698

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01730.1	EER88812	AT1G30460.1	16897494
AT2G01730.1	KXG36988	AT3G06560.1	16897494
AT2G01730.1	OQU92698	AT3G06560.1	16897494
AT2G01730.1	EER93127	AT5G23880.1	16897494
AT2G01730.1	EER93127	AT5G23880.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G060590.1	Barley	cytosol	33.15	93.43
Zm00001d044213_P001	Maize	cytosol	79.57	79.57
VIT_01s0011g05780.t01	Wine grape	cytosol	12.19	72.34
TraesCS5D01G210400.1	Wheat	cytosol	70.61	71.38
TraesCS5A01G203800.1	Wheat	cytosol	70.61	71.38
HORVU5Hr1G060570.5	Barley	cytosol	71.33	71.2
Os09t0397900-01	Rice	cytosol	69.89	69.77
TraesCS5B01G202500.1	Wheat	cytosol	56.81	69.06
KRH70353	Soybean	cytosol	63.44	66.54
Solyc04g008030.1.1	Tomato	cytosol	64.16	55.16
CDY09421	Canola	cytosol	58.06	52.68
AT2G01730.1	Thale cress	cytoskeleton, cytosol, plasma membrane	57.71	52.53
CDY66642	Canola	cytosol	57.89	52.52
Bra026637.1-P	Field mustard	cytosol	57.89	52.52
GSMUA_Achr3P07540_001	Banana	cytosol	58.6	49.62
PGSC0003DMT400075788	Potato	extracellular	21.33	33.81
EER90498	Sorghum	plastid	31.36	25.18
EER93127	Sorghum	cytosol	20.07	15.18

Protein Annotations

MapMan:16.2.1.2.4	Gene3D:3.40.50.10890	Gene3D:3.60.15.10	EntrezGene:8054389	InterPro:Beta_Casp	UniProt:C5XR29
EnsemblPlants:EES01080	ProteinID:EES01080	ProteinID:EES01080.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0007275	GO:GO:0008150	GO:GO:0009987	GO:GO:0010197	GO:GO:0016043
GO:GO:0030154	InterPro:IPR036866	InterPro:Metallo-B-lactamas	PFAM:PF07521	PFAM:PF10996	PFAM:PF16661
PANTHER:PTHR11203	PANTHER:PTHR11203:SF37	InterPro:RMMBL	InterPro:RibonucZ/Hydroxyglut_hydro	SMART:SM00849	SMART:SM01027
EnsemblPlantsGene:SORBI_3003G222000	SUPFAM:SSF56281	UniParc:UPI0001A84A8B	RefSeq:XP_002455960.1	:	:

Description

hypothetical protein

Coordinates

chr3:+:55755644..55762242

Molecular Weight (calculated)

62559.0 Da

IEP (calculated)

6.761

GRAVY (calculated)

-0.132

Length

558 amino acids

Sequence
(BLAST)

001: MAIECLVLGA GQEVGKSCVV VTIGGKRVMF DCGMHMGYHD HRHYPDFARA LAAWGAPDFT TAISCVVITH FHLDHIGALP YFTEICGYHG PIYMTYPTKA
101: LAPFMLEDYR KVTMDQRGEE EQYSYEDILR CMKKVIPMDL KQTIQVDKDL VIRAYYAGHV IGAAMIYAKV GDAAMVYTGD YNMTPDRHLG AAQIDHLKLD
201: LLITESTYAK TIRDSKHARE REFLKAVHKC VSGGGKVLIP TFALGRAQEL CMLLDDYWER MDLKVPIYFS AGLTIQANVY YKMLIGWTSQ KIKDSHAVHN
301: PFDFKHVCHF ERSFINNPGP CVLFATPGMI SGGFSLEAFK KWAPSEKNLI TLPGYCVSGT IGHKLMCGKP TRIDYKDIHI DVRCQIHQLA FSPHTDSKGI
401: MDLTEFLSPK HVILVHGEKP QMAFLKERIE SELGMPCYYP GNNESVSIPT TQNLKMSATE RFITSCAVEQ GKRSLHKRNL ICGTGLSEVI GSDEEAAEGI
501: LLMEKHKSPK ILCEDELLEV LGMEQHLVQF EPMVSRIVAD VESELQRAKA ADLDSDGK

Best Arabidopsis Sequence Match ( AT2G01730.1 )
(BLAST)

001: MAIDCLVLGA GQEIGKSCVV VTINGKKIMF DCGMHMGCDD HNRYPNFSLI SKSGDFDNAI SCIIITHFHM DHVGALPYFT EVCGYNGPIY MSYPTKALSP
101: LMLEDYRRVM VDRRGEEELF TTTHIANCMK KVIAIDLKQT IQVDEDLQIR AYYAGHVLGA VMVYAKMGDA AIVYTGDYNM TTDRHLGAAK IDRLQLDLLI
201: SESTYATTIR GSKYPREREF LQAVHKCVAG GGKALIPSFA LGRAQELCML LDDYWERMNI KVPIYFSSGL TIQANMYYKM LISWTSQNVK EKHNTHNPFD
301: FKNVKDFDRS LIHAPGPCVL FATPGMLCAG FSLEVFKHWA PSPLNLVALP GYSVAGTVGH KLMAGKPTTV DLYNGTKVDV RCKVHQVAFS PHTDAKGIMD
401: LTKFLSPKNV VLVHGEKPSM MILKEKITSE LDIPCFVPAN GETVSFASTT YIKANASDMF LKSCSNPNFK FSNSTQLRVT DHRTADGVLV IEKSKKAKIV
501: HQDEISEVLH EKNHVVSLAH CCPVKVKGES EDDDVDLIKQ LSAKILKTVS GAQIHESENC LQVASFKGSL CLKDKCMHRS SSSSSEAVFL CCNWSIADLE
601: LGWEIINAIK LNH

Arabidopsis Description

CPSF73-IICleavage and polyadenylation specificity factor subunit 3-II [Source:UniProtKB/Swiss-Prot;Acc:Q8GUU3]
SUBAcon: [cytosol,plasma membrane,cytoskeleton]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.