CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, endoplasmic reticulum

Predictor Summary:

nucleus 1
plastid 1
cytosol 1
mitochondrion 1
extracellular 1
golgi 1
plasma membrane 2
endoplasmic reticulum 2
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88812
EES01080
KXG25932
KXG37677

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06560.1	EER88812	AT1G30460.1	16897494
AT3G06560.1	EER88812	AT1G30460.1	18479511
AT3G06560.1	EES01080	AT2G01730.1	16897494
AT3G06560.1	KXG25932	AT5G51660.1	16897494
AT3G06560.1	KXG37677	AT5G58040.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022535_P004	Maize	endoplasmic reticulum, plasma membrane	85.69	88.25
HORVU0Hr1G029140.2	Barley	cytosol	56.34	67.76
HORVU0Hr1G035930.1	Barley	cytosol	56.34	67.76
TraesCS2A01G096500.1	Wheat	cytosol, mitochondrion, nucleus, vacuole	60.33	66.87
Os07t0688500-00	Rice	cytosol	62.86	66.22
TraesCS2B01G112000.1	Wheat	cytosol, plasma membrane, plastid	62.14	64.6
TraesCS2D01G095000.1	Wheat	cytosol	60.14	62.76
HORVU2Hr1G016100.3	Barley	cytosol	53.26	55.47
OQU92698	Sorghum	cytosol, plasma membrane, plastid	55.62	50.74
PGSC0003DMT400074732	Potato	cytosol, peroxisome, plastid	40.4	44.69
GSMUA_Achr8P29920_001	Banana	cytosol, golgi, plastid	44.93	44.52
Solyc12g099180.1.1	Tomato	cytosol	34.96	44.37
Solyc01g058260.2.1	Tomato	cytosol, peroxisome, plastid	38.22	44.05
CDY24682	Canola	nucleus	37.5	42.33
VIT_05s0077g00650.t01	Wine grape	plastid	42.93	42.1
CDY05277	Canola	nucleus	38.22	41.13
AT3G06560.1	Thale cress	nucleus	37.5	40.83
Bra029588.1-P	Field mustard	nucleus	37.68	40.47
PGSC0003DMT400011757	Potato	nucleus	40.76	40.18
KXG27007	Sorghum	nucleus	25.91	26.19
KXG29853	Sorghum	mitochondrion	28.26	22.35
OQU76574	Sorghum	nucleus	27.36	21.73
EER93704	Sorghum	cytosol	26.09	19.2

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	UniProt:A0A1B6QGD3	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0031123	GO:GO:0043631	EnsemblPlants:KXG36988
ProteinID:KXG36988	ProteinID:KXG36988.1	InterPro:NuclTrfase_I-like_C	PFAM:PF01909	PFAM:PF04928	PANTHER:PTHR10682
PANTHER:PTHR10682:SF20	InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	EnsemblPlantsGene:SORBI_3002G423100	SUPFAM:SSF55003
SUPFAM:SSF81301	SUPFAM:SSF81631	UniParc:UPI00081ABADB	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:-:77028435..77033006

Molecular Weight (calculated)

62150.2 Da

IEP (calculated)

6.865

GRAVY (calculated)

-0.089

Length

552 amino acids

Sequence
(BLAST)

001: MAYMAAVAPV PWWPPPPELA PVGFPDASSP AGYPKPQTLP FLLAPTPPPP PPPPPLPAGY PLLPPPAPII IQLQPDPSFV AEVDQRRSSS LVQFLKDEGA
101: VPSPEDEKKR EKVIRELKKI VMHWANAVAY EQSVPQGLAT ATVLTYGSYT LGAHGPESDI DVLCVGPCIA TLQYHFFVVL RQLLEGRPEV SELQTIEKAK
201: VPLMRFRFTG IAVDFTYAQL PVIDALKAIN TFSTQLLQKI DTRSWRSLSG VRVNEQIVQL VPNAEKFQAL LRCIKLWARK RGLHCHYLGF FAGIHLAILA
301: AYVCRKFPDA SVNGLFAVFF QTFAHWPWQV PVSLHDEPTT SLHSEGLLMP IVMPCTPPEF CVSNVTRGSF KKIREELTRG YALTRDSLRH DFQWTWLFEP
401: FPYDKKYQQF LRIALCAPTF AELRDWAGWV KSRFRLLILK LERAGIECDP CPSEEVDHTD NDPNVVFYWG LIPERIIQVD TSSLKEDFME SITNDVYGTV
501: KCTHSDVTIS VVGLPQLPKS MRSHVHWQYM QRCMMAYEGT DEGQSAGWLG LG

Best Arabidopsis Sequence Match ( AT3G06560.1 )
(BLAST)

001: MKKGGGRNKG FPQDDESSIS LRQLMVNEGL IPSLEDEVKR RGVINQLRKI VVRWVKNVAW QHRLPQNQID ATNATILPYG SYGLGVYGSE SDIDALCIGP
101: FFASIAEDFF ISLRDMLKSR REVSELHCVK DAKVPLIRFK FDGILVDLPY AQLRVLSIPN NVDVLNPFFL RDIDETSWKI LSGVRANKCI LQLVPSLELF
201: QSLLRCVKLW AKRRGVYGNL NGFLGGVHMA ILAAFVCGYQ PNATLSSLLA NFFYTFAHWQ WPTPVVLLED TYPSTGAPPG LMPIQLPCGS HQYCNSTITR
301: STFYKIVAEF LLGHNLTKDY LKLNFSWKDL FELYPYANTY TWFTKIHLSA ANQEDLSDWV GWVKSRFRCL LIKIEEVYGI CDPNPTEYVE TYTKQPNIVF
401: YWGLQLRTIN VSDIESVKID FLKNVNSGSF RGTVGRIQLT LVKASQLPKN GECGSNNRSK KVTKTCWRIR EDKQCNNVPV YSKHLPGYVV GYQKMVNREA
501: DGMEVKC

Arabidopsis Description

PAPS3Nuclear poly(A) polymerase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q56XM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.