CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002505_P001	Maize	nucleus	86.08	85.14
TraesCS2A01G342300.1	Wheat	nucleus	65.57	68.06
TraesCS2B01G340000.1	Wheat	nucleus	65.2	67.68
HORVU2Hr1G079870.2	Barley	nucleus	66.48	67.35
TraesCS2D01G319900.1	Wheat	cytosol, mitochondrion, nucleus, plasma membrane	55.31	66.96
TraesCS2D01G320700.1	Wheat	nucleus	65.02	66.73
Os04t0588350-00	Rice	nucleus, plastid	67.58	66.37
TraesCS2D01G451500.1	Wheat	nucleus	66.12	65.88
TraesCS2A01G451700.1	Wheat	nucleus	65.38	65.62
TraesCSU01G155200.1	Wheat	nucleus	65.38	65.62
TraesCS2A01G451800.1	Wheat	nucleus	65.57	65.57
TraesCS2B01G473300.1	Wheat	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	66.3	64.41
HORVU4Hr1G013750.2	Barley	nucleus	65.38	64.21
Os01t0702900-01	Rice	extracellular	15.02	63.57
TraesCS2B01G473400.1	Wheat	plastid	40.84	61.1
OQU76574	Sorghum	nucleus	56.23	44.17
KXG29853	Sorghum	mitochondrion	52.2	40.83
EER93704	Sorghum	cytosol	44.87	32.67
HORVU2Hr1G105500.3	Barley	cytosol	32.78	32.31
KXG36988	Sorghum	endoplasmic reticulum, plasma membrane	26.19	25.91
OQU92698	Sorghum	cytosol, plasma membrane, plastid	25.82	23.31

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	UniProt:A0A1B6PMV7	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0031123
GO:GO:0043631	GO:GO:0046872	EnsemblPlants:KXG27007	ProteinID:KXG27007	ProteinID:KXG27007.1	InterPro:NuclTrfase_I-like_C
PFAM:PF01909	PFAM:PF04926	PFAM:PF04928	PIRSF:PIRSF018425	PANTHER:PTHR10682	PANTHER:PTHR10682:SF26
InterPro:PolA_pol_RNA-bd_dom	InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	EnsemblPlantsGene:SORBI_3006G195600	SUPFAM:SSF55003
SUPFAM:SSF81301	SUPFAM:SSF81631	UniParc:UPI00081AE570	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:+:54858686..54860326

Molecular Weight (calculated)

60767.6 Da

IEP (calculated)

7.353

GRAVY (calculated)

-0.306

Length

546 amino acids

Sequence
(BLAST)

001: MASSQPKQQM FGEPISLVGP TPADLEATAE LEKVLREAGM YESPQESAVR AEVLRDLQGI VDRWVKQLTL KHGYPDAMVD EATALLLPFG SYRLGVHGGG
101: SDIDALVVGP SFVDRDQDFF GVLAGALAEA TEAVTDLQPV PGAHVPVMKL RFRGVQVDLV YASVNLPVVP RDLDLSDRAV LRGLDHVTAR SMNGVRVADE
201: ILRLVPDAAA FRTALRCVKL WAKARGVYSN VSGFLGGVAW AILVARVCQL YPNAAPSMLV SRFFKVLSQW KWPTPVMLCD IEHDDELGLP VWDGRRNPRD
301: RTHLMPVITP AYPCMNCTYN VSQATQRIIK EQIQAGHVAC QEIAAGGDRG WGALFQPFPF FRTHKSYLQV DATVAGGEEE LREWKGWVES RLRQLVAKVE
401: RDTFGELLCH QNPRAYDAEP HGLRCASSFF VGLSKPQQQR QQPSPPQGQQ PQFDLRATAD EFLQDVYTYR FWRPGLELAV KHVRRKDLPP YVMHKIRGPN
501: IHELKRKRDD DDSSPSSPTL CSSSSASSCD DDSVRRPSSR ARLHPT

Best Arabidopsis Sequence Match ( AT4G32850.1 )
(BLAST)

001: MMVGTQNLGG SLPPLNSPKS YGITKPLSLA GPSSADIKRN VELEKYLVDE GLYESKDDTM RREEVLGRID QIVKHWVKQL TQQRGYTDQM VEDANAVIFT
101: FGSYRLGVHG PGADIDTLCV GPSYVNREED FFIILHDILA EMEEVTELHP VPDAHVPVMK FKFQGIPIDL LYASISLLVV PQDLDISSSS VLCEVDEPTV
201: RSLNGCRVAD QILKLVPNFE HFRTTLRCLK YWAKKRGVYS NVTGFLGGVN WALLVARVCQ LYPNAIPSML VSRFFRVYTQ WRWPNPVMLC AIEEDELGFP
301: VWDRRKNHRD RYHLMPIITP AYPCMNSSYN VSQSTLRVMT EQFQFGNNIL QEIELNKQHW SSLFEQYMFF EAYKNYLQVD IVAADAEDLL AWKGWVESRF
401: RQLTLKIERD TNGMLMCHPQ PNEYVDTARQ FLHCAFFMGL QRAEGVGGQE CQQFDIRGTV DEFRQEVNMY MFWKPGMDVF VSHVRRRQLP PFVFPNGYRR
501: PRQSRHQNLP GGKSGEDGSV SHSGSVVERH AKRKNDSEMM DVRPEKPEKR ASLSPQSLDI VSPENSAITT GWTPPVCNLR RPPSEEIEAD NLNTECTELT
601: DLARNECNSG SEQVLEVDSM AVVQECSDPA EPLGKCVTPD SVDVVACVSG QEENLDRNLR SVSISGTDSP LLPSRSCGQN RDYEGFGFPA ANSDPMGKKN
701: LYSQSGMSED LQSNSLVSGM EKSEDRARSE SFQKSQIRLL T

Arabidopsis Description

nPAPnuclear poly(a) polymerase [Source:TAIR;Acc:AT4G32850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.