Factsheet for Zm00001d002505_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG27007	Sorghum	nucleus	85.14	86.08
TraesCS2A01G342300.1	Wheat	nucleus	61.78	64.83
TraesCS2B01G340000.1	Wheat	nucleus	61.78	64.83
HORVU2Hr1G079870.2	Barley	nucleus	62.5	64.01
TraesCS2D01G320700.1	Wheat	nucleus	61.59	63.91
Os04t0588350-00	Rice	nucleus, plastid	63.77	63.31
TraesCS2D01G451500.1	Wheat	nucleus	62.68	63.14
TraesCSU01G155200.1	Wheat	nucleus	62.14	63.05
TraesCS2A01G451700.1	Wheat	nucleus	62.14	63.05
TraesCS2D01G319900.1	Wheat	cytosol, mitochondrion, nucleus, plasma membrane	51.45	62.97
TraesCS2A01G451800.1	Wheat	nucleus	62.14	62.82
HORVU4Hr1G013750.2	Barley	nucleus	62.5	62.05
TraesCS2B01G473300.1	Wheat	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	62.86	61.74
Os01t0702900-01	Rice	extracellular	14.13	60.47
TraesCS2B01G473400.1	Wheat	plastid	38.77	58.63
Zm00001d031424_P001	Maize	cytosol	13.22	42.69
Zm00001d036977_P001	Maize	nucleus	52.54	41.31
Zm00001d044377_P001	Maize	cytosol	11.59	41.29
Zm00001d040140_P001	Maize	cytosol	13.41	40.88
Zm00001d016073_P001	Maize	cytosol	13.95	40.53
Zm00001d053559_P007	Maize	mitochondrion	49.64	40.0
Zm00001d021105_P001	Maize	endoplasmic reticulum, plasma membrane	9.42	35.86
Zm00001d046255_P035	Maize	nucleus	52.17	34.91
Zm00001d012429_P002	Maize	endoplasmic reticulum, extracellular, plasma membrane	9.6	33.33
Zm00001d033448_P004	Maize	nucleus	42.75	31.68
Zm00001d013599_P016	Maize	nucleus	42.93	31.6
HORVU2Hr1G105500.3	Barley	cytosol	31.16	31.05
Zm00001d047607_P001	Maize	cytosol, plasma membrane, plastid	26.09	28.35
Zm00001d028920_P004	Maize	cytosol, plasma membrane, plastid	26.99	27.59
Zm00001d022535_P004	Maize	endoplasmic reticulum, plasma membrane	26.63	27.43

Protein Annotations

Gene3D:1.10.1410.10	EntrezGene:103646013	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	UniProt:A0A1D6E1L2
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004652
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779
GO:GO:0031123	GO:GO:0043631	GO:GO:0046872	InterPro:NuclTrfase_I-like_C	ProteinID:ONM14561.1	PFAM:PF01909
PFAM:PF04926	PFAM:PF04928	PIRSF:PIRSF018425	PANTHER:PTHR10682	PANTHER:PTHR10682:SF26	InterPro:PolA_pol_RNA-bd_dom
InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631
UniParc:UPI0002210601	EnsemblPlantsGene:Zm00001d002505	EnsemblPlants:Zm00001d002505_P001	EnsemblPlants:Zm00001d002505_T001	SEG:seg	:

Description

Nuclear poly(A) polymerase 2

Coordinates

chr2:-:14183518..14185176

Molecular Weight (calculated)

61185.5 Da

IEP (calculated)

8.048

GRAVY (calculated)

-0.194

Length

552 amino acids

Sequence
(BLAST)

001: MASQPKKISS EPISLVGPTP ADIEATAQLE KLLREAGMYE SAEESAVRAE VLRDLQGIVD LWVKQLMLKH GYPDAMVDEA TAFVLPFGSY RLGVLGGGSD
101: IDALVVGPSF VDRDQDFFGV LAGVLAETEA VTELHPVPGA HVPVMKLRFR GVQVDLVYAS VNLPVVPRNL DLSDRHVLRG LDHVTARSMN GVRVADEIVR
201: LVPDAAAFRT TLRCVKLWAK SRGVYSNVSG FLGGVAWAIL VARVCQLYPN AVPSMLVSRF FKVFSHWRWP IPVMLCDIEH DDELGLPVWD VRRNLPDRSH
301: LMPVITPAYP CMNCTYNVSR ATHRVIKEQI QAGDVACQKI AAGGGRDWGA LFQPSPFFST HKSYLQVDAA VAGGAEELRE WKGWVESRLR QLVAKVERDT
401: FGELLCHQNP RAYDAEPHGL RRASSFFVGL SKPQQQHKPH PPEGYPPFFD LRATVLEFQQ DVYSYKFWRP GLELVVKHVR RNKLPAYVMQ KIGGRNIHEL
501: KRKRADDDSS PSSPPLCSSS SASSGDGDSV QGPSSRAELH PRKAMLFDPS PS

Best Arabidopsis Sequence Match ( AT4G32850.10 )
(BLAST)

001: MMVGTQNLGG SLPPLNSPKS YGITKPLSLA GPSSADIKRN VELEKYLVDE GLYESKDDTM RREEVLGRID QIVKHWVKQL TQQRGYTDQM VEDANAVIFT
101: FGSYRLGVHG PGADIDTLCV GPSYVNREED FFIILHDILA EMEEVTELHP VPDAHVPVMK FKFQGIPIDL LYASISLLVV PQDLDISSSS VLCEVDEPTV
201: RSLNGCRVAD QILKLVPNFE HFRTTLRCLK YWAKKRGVYS NVTGFLGGVN WALLVARVCQ LYPNAIPSML VSRFFRVYTQ WRWPNPVMLC AIEEDELGFP
301: VWDRRKNHRD RYHLMPIITP AYPCMNSSYN VSQSTLRVMT EQFQFGNNIL QEIELNKQHW SSLFEQYMFF EAYKNYLQVD IVAADAEDLL AWKGWVESRF
401: RQLTLKIERD TNGMLMCHPQ PNEYVDTARQ FLHCAFFMGL QRAEGVGGQE CQQFDIRGTV DEFRQEVNMY MFWKPGMDVF VSHVRRRQLP PFVFPNGYRR
501: PRQSRHQNLP GGKSGEDGSV SHSGSVVERH AKRKNDSEMM DVRPEKPEKR ASLSPQSLDI VSPENSAITT GWTPPVCNLR RPPSEEIEAD NLNTECTELT
601: DLARNECNSG SEQVLEVDSM AVVQECSDPA EPLGKCVTPD SVDVVACVSG QEENLDRNLR SVSISGTDSP LLPSRSCGQN RDYEGFGFPA ANSDPMGKKN
701: LYSQSGMSED LQSNSLVSGM EKSEDRARSE SFQKSQIRHV CYAKS

Arabidopsis Description

nPAPnuclear poly(a) polymerase [Source:TAIR;Acc:AT4G32850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.