Factsheet for Zm00001d016073_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031424_P001	Maize	cytosol	85.79	95.32
Zm00001d040140_P001	Maize	cytosol	86.84	91.16
Zm00001d044377_P001	Maize	cytosol	73.68	90.32
Os06t0319600-01	Rice	cytosol	40.0	58.91
Zm00001d033448_P004	Maize	nucleus	92.11	23.49
Zm00001d013599_P016	Maize	nucleus	87.37	22.13
EER93704	Sorghum	cytosol	87.37	22.13
TraesCS4A01G246800.1	Wheat	nucleus	76.84	20.05
TraesCS4D01G067100.1	Wheat	nucleus	76.84	20.03
TraesCS4B01G068100.1	Wheat	nucleus	76.84	20.03
HORVU4Hr1G011370.8	Barley	nucleus	77.37	19.44
VIT_17s0000g03120.t01	Wine grape	cytosol, nucleus, plastid	61.05	17.82
VIT_01s0011g04320.t01	Wine grape	nucleus	62.63	16.62
GSMUA_AchrUn_...	Banana	nucleus	64.21	16.42
Solyc05g008630.2.1	Tomato	nucleus	58.42	16.28
CDY17685	Canola	nucleus	57.89	16.27
Bra016573.1-P	Field mustard	nucleus	58.95	16.18
Bra024894.1-P	Field mustard	nucleus	56.84	16.07
CDY21725	Canola	nucleus	60.0	16.03
CDX81855	Canola	nucleus	59.47	15.92
AT1G17980.1	Thale cress	nucleus	59.47	15.85
CDX83877	Canola	nucleus	58.95	15.73
CDX96740	Canola	nucleus	58.95	15.71
PGSC0003DMT400078394	Potato	nucleus	58.42	15.66
CDX77811	Canola	nucleus	56.32	15.44
KRH39125	Soybean	nucleus	61.05	15.32
KRH48590	Soybean	nucleus	60.53	15.19
Zm00001d036977_P001	Maize	nucleus	54.21	14.67
Zm00001d053559_P007	Maize	mitochondrion	52.63	14.6
KRH60473	Soybean	cytosol	44.74	14.26
Zm00001d002505_P001	Maize	nucleus	40.53	13.95
Bra031010.1-P	Field mustard	nucleus	50.0	13.79
Zm00001d046255_P035	Maize	nucleus	53.16	12.24
Zm00001d047607_P001	Maize	cytosol, plasma membrane, plastid	28.42	10.63
Zm00001d028920_P004	Maize	cytosol, plasma membrane, plastid	30.0	10.56
CDY58017	Canola	cytosol, nucleus, plasma membrane	16.32	10.54
Zm00001d022535_P004	Maize	endoplasmic reticulum, plasma membrane	28.42	10.07
Zm00001d021105_P001	Maize	endoplasmic reticulum, plasma membrane	3.16	4.14
Zm00001d012429_P002	Maize	endoplasmic reticulum, extracellular, plasma membrane	3.16	3.77

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	UniProt:A0A1D6H5B7	ProteinID:AQK70016.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004652	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779
GO:GO:0043631	PFAM:PF01909	PFAM:PF04928	PANTHER:PTHR10682	PANTHER:PTHR10682:SF22	InterPro:PolA_pol_cen_dom
InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF81301	UniParc:UPI0008448D97	EnsemblPlantsGene:Zm00001d016073	EnsemblPlants:Zm00001d016073_P001
EnsemblPlants:Zm00001d016073_T001	:	:	:	:	:

Description

Nuclear poly(A) polymerase 1

Coordinates

chr5:-:142989967..142994253

Molecular Weight (calculated)

21616.6 Da

IEP (calculated)

5.978

GRAVY (calculated)

-0.467

Length

190 amino acids

Sequence
(BLAST)

001: MSKVKNNNGY HGVTEPISLS GPTEKYLMQT DEVEKYLSDA RLYERQDEAI LREEVLGKLD QTVKAWIKKA TRINGYGEQF VHEANAKTFT FGSYCLGVHG
101: PDADIDTLCV GPRHATRNEY FFRWLHDILA EMPEVSELHP VPDAHVPVLG FKINGVSIDL LYANLAHAVI PESREIMIHY KHRKDGDYDS

Best Arabidopsis Sequence Match ( AT1G17980.1 )
(BLAST)

001: MASVQQNGQR FGVSEPISMG GPTEFDVIKT RELEKHLQDV GLYESKEEAV RREEVLGILD QIVKTWIKTI SRAKGLNDQL LHEANAKIFT FGSYRLGVHG
101: PGADIDTLCV GPRHATREGD FFGELQRMLS EMPEVTELHP VPDAHVPLMG FKLNGVSIDL LYAQLPLWVI PEDLDLSQDS ILQNADEQTV RSLNGCRVTD
201: QILRLVPNIQ NFRTTLRCMR FWAKRRGVYS NVSGFLGGIN WALLVARICQ LYPNALPNIL VSRFFRVFYQ WNWPNAIFLC SPDEGSLGLQ VWDPRINPKD
301: RLHIMPIITP AYPCMNSSYN VSESTLRIMK GEFQRGNEIC EAMESNKADW DTLFEPFAFF EAYKNYLQID ISAANVDDLR KWKGWVESRL RQLTLKIERH
401: FKMLHCHPHP HDFQDTSRPL HCSYFMGLQR KQGVPAAEGE QFDIRRTVEE FKHTVNAYTL WIPGMEISVG HIKRRSLPNF VFPGGVRPSH TSKGTWDSNR
501: RSEHRNSSTS SAPAATTTTT EMSSESKAGS NSPVDGKKRK WGDSETLTDQ PRNSKHIAVS VPVENCEGGS PNPSVGSICS SPMKDYCTNG KSEPISKDPP
601: ENVVAFSKDP PESLPIEKIA TPQAHETEEL EESFDFGNQV IEQISHKVAV LSATATIPPF EATSNGSPFP YEAVEELEVL PTRQPDAAHR PSVQQRKPII
701: KLSFTSLGKT NGK

Arabidopsis Description

PAPS1Nuclear poly(A) polymerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.