Factsheet for VIT_01s0011g04320.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g03120.t01	Wine grape	cytosol, nucleus, plastid	61.17	67.28
Zm00001d031424_P001	Maize	cytosol	16.06	67.25
Zm00001d044377_P001	Maize	cytosol	14.11	65.16
Zm00001d040140_P001	Maize	cytosol	16.2	64.09
Zm00001d016073_P001	Maize	cytosol	16.62	62.63
Solyc05g008630.2.1	Tomato	nucleus	58.1	61.0
VIT_13s0073g00320.t01	Wine grape	cytosol	4.89	59.32
GSMUA_AchrUn_...	Banana	nucleus	61.17	58.95
PGSC0003DMT400078394	Potato	nucleus	57.26	57.83
Os06t0319600-01	Rice	cytosol	10.2	56.59
VIT_11s0016g03040.t01	Wine grape	nucleus	43.58	52.17
TraesCS4B01G068100.1	Wheat	nucleus	50.0	49.11
TraesCS4D01G067100.1	Wheat	nucleus	49.86	48.97
TraesCS4A01G246800.1	Wheat	nucleus	49.72	48.9
Zm00001d013599_P016	Maize	nucleus	50.0	47.73
Zm00001d033448_P004	Maize	nucleus	49.44	47.52
EER93704	Sorghum	cytosol	49.58	47.33
HORVU4Hr1G011370.8	Barley	nucleus	49.86	47.22
VIT_09s0002g03380.t01	Wine grape	cytosol	49.58	46.96
VIT_05s0077g00650.t01	Wine grape	plastid	24.86	31.62

Protein Annotations

Gene3D:1.10.1410.10	EntrezGene:100252483	wikigene:100252483	EntrezGene:100855231	wikigene:100855231	MapMan:16.2.1.1.1
Gene3D:3.30.460.10	Gene3D:3.30.70.590	ProteinID:CCB50866	ProteinID:CCB50866.1	ncoils:Coil	UniProt:F6HFL7
EMBL:FN595752	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004652
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006378	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779
GO:GO:0031123	GO:GO:0043631	EntrezGene:LOC100252483	wikigene:LOC100252483	EntrezGene:LOC100855231	wikigene:LOC100855231
InterPro:NuclTrfase_I-like_C	PFAM:PF01909	PFAM:PF04926	PFAM:PF04928	PANTHER:PTHR10682	PANTHER:PTHR10682:SF22
InterPro:PolA_pol_RNA-bd_dom	InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003	SUPFAM:SSF81301
SUPFAM:SSF81631	UniParc:UPI0001982959	ArrayExpress:VIT_01s0011g04320	EnsemblPlantsGene:VIT_01s0011g04320	EnsemblPlants:VIT_01s0011g04320.t01	RefSeq:XP_002280091
RefSeq:XP_002280091.2	RefSeq:XP_003631213	RefSeq:XP_003631213.1	RefSeq:XP_010662582.1	SEG:seg	:

Description

No Description!

Coordinates

chr1:-:3898617..3907471

Molecular Weight (calculated)

80527.9 Da

IEP (calculated)

6.653

GRAVY (calculated)

-0.361

Length

716 amino acids

Sequence
(BLAST)

001: MASVSASNQV NTLCLGVSEP ISTAGPTEFD LIKTRELEKF LADSGLYETR EEAIRREEVL GRVDQIVKVW VKTVSRAKGF NEQLVHEANA KIFTFGSYRL
101: GVHGPGADID TLCVGPRHAT RDEDFFGELH RMLAETPEVQ ELHPVPDAHV PVMKFKFNGV SIDLLYARLS LWVIPEDLDI SQETILQNVD EQTVRSLNGC
201: RVTDQILRLV PNIQNFRTTL RCMRFWAKRR GVYSNVSGFL GGINWALLVA RICQLYPNAV PSTLVSRFFR VYTQWRWPNP VMLCPIEEKC LGLPVWDPRR
301: NIKDRNHLMP IITPAYPSMN SSYNVSWSTL RIMEEELQRG NEIVKEMETE NTGWITLFEP FLFFEAYKNY LQIDITAEND VDLRNWKGWV ESRLRLLTRK
401: IERDTGGMLQ CHPHPAEFSD TSRSFHYCYF MGLRRKEGSA AQEGEQFDIR LTVDDFKNTV WMYSSWKRGM WIHVCHIRRK NIPNFVFPGG VRPPQPMKVA
501: GEQGQVSKPM GFNSQKRKRD EIDAGSHPRE STSLVENVES DLQGEVKLEQ VEVNVGDSLT KVICSSENSS HNSIELEGYA RCSQPLGAAS SASGSLSLGR
601: ALVIETTSEP LVHQCSSKEV GESQVGLVDQ VQNFDVGKRV NCVQSSTAER GMAAAAAGQG FSPCSSLFQN GGLEELEDAE LTAPFYHGNP GASSTPQKHL
701: IRLSVNSLVK ARGKGT

Best Arabidopsis Sequence Match ( AT1G17980.1 )
(BLAST)

001: MASVQQNGQR FGVSEPISMG GPTEFDVIKT RELEKHLQDV GLYESKEEAV RREEVLGILD QIVKTWIKTI SRAKGLNDQL LHEANAKIFT FGSYRLGVHG
101: PGADIDTLCV GPRHATREGD FFGELQRMLS EMPEVTELHP VPDAHVPLMG FKLNGVSIDL LYAQLPLWVI PEDLDLSQDS ILQNADEQTV RSLNGCRVTD
201: QILRLVPNIQ NFRTTLRCMR FWAKRRGVYS NVSGFLGGIN WALLVARICQ LYPNALPNIL VSRFFRVFYQ WNWPNAIFLC SPDEGSLGLQ VWDPRINPKD
301: RLHIMPIITP AYPCMNSSYN VSESTLRIMK GEFQRGNEIC EAMESNKADW DTLFEPFAFF EAYKNYLQID ISAANVDDLR KWKGWVESRL RQLTLKIERH
401: FKMLHCHPHP HDFQDTSRPL HCSYFMGLQR KQGVPAAEGE QFDIRRTVEE FKHTVNAYTL WIPGMEISVG HIKRRSLPNF VFPGGVRPSH TSKGTWDSNR
501: RSEHRNSSTS SAPAATTTTT EMSSESKAGS NSPVDGKKRK WGDSETLTDQ PRNSKHIAVS VPVENCEGGS PNPSVGSICS SPMKDYCTNG KSEPISKDPP
601: ENVVAFSKDP PESLPIEKIA TPQAHETEEL EESFDFGNQV IEQISHKVAV LSATATIPPF EATSNGSPFP YEAVEELEVL PTRQPDAAHR PSVQQRKPII
701: KLSFTSLGKT NGK

Arabidopsis Description

PAPS1Nuclear poly(A) polymerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.