Factsheet for TraesCS4D01G067100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G068100.1	Wheat	nucleus	98.08	98.08
TraesCS4A01G246800.1	Wheat	nucleus	97.67	97.8
HORVU4Hr1G011370.8	Barley	nucleus	96.43	92.99
Zm00001d031424_P001	Maize	cytosol	19.34	82.46
Zm00001d044377_P001	Maize	cytosol	17.28	81.29
Zm00001d040140_P001	Maize	cytosol	19.62	79.01
Zm00001d016073_P001	Maize	cytosol	20.03	76.84
Os06t0319600-01	Rice	cytosol	13.44	75.97
EER93704	Sorghum	cytosol	74.21	72.13
Zm00001d033448_P004	Maize	nucleus	73.25	71.68
Zm00001d013599_P016	Maize	nucleus	73.66	71.6
CDY58017	Canola	cytosol, nucleus, plasma membrane	25.93	64.29
VIT_17s0000g03120.t01	Wine grape	cytosol, nucleus, plastid	52.13	58.37
GSMUA_AchrUn_...	Banana	nucleus	56.52	55.45
Solyc05g008630.2.1	Tomato	nucleus	50.34	53.81
CDX81855	Canola	nucleus	51.58	52.96
CDY21725	Canola	nucleus	51.58	52.88
CDX96740	Canola	nucleus	51.44	52.59
AT1G17980.1	Thale cress	nucleus	51.3	52.45
CDX83877	Canola	nucleus	51.03	52.25
Bra016573.1-P	Field mustard	nucleus	49.11	51.73
Bra031010.1-P	Field mustard	nucleus	48.7	51.52
Bra024894.1-P	Field mustard	nucleus	47.19	51.19
CDY17685	Canola	nucleus	47.33	51.04
PGSC0003DMT400078394	Potato	nucleus	48.97	50.35
CDX77811	Canola	nucleus	47.74	50.22
KRH39125	Soybean	nucleus	51.99	50.07
VIT_01s0011g04320.t01	Wine grape	nucleus	48.97	49.86
KRH48590	Soybean	nucleus	51.17	49.27
TraesCS2D01G319900.1	Wheat	cytosol, mitochondrion, nucleus, plasma membrane	29.63	47.89
TraesCS2D01G320700.1	Wheat	nucleus	34.29	46.99
TraesCS2D01G451500.1	Wheat	nucleus	34.16	45.44
TraesCS7D01G365600.4	Wheat	nucleus	44.44	44.63
KRH60473	Soybean	cytosol	34.98	42.79
TraesCS6D01G174400.1	Wheat	cytosol, mitochondrion	40.88	42.51
TraesCS3D01G006700.1	Wheat	cytosol	22.91	39.2
TraesCS4D01G182000.1	Wheat	nucleus	20.3	27.41
TraesCS2D01G095000.1	Wheat	cytosol	19.75	27.22

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016740	GO:GO:0016779	GO:GO:0031123	GO:GO:0043631	InterPro:NuclTrfase_I-like_C	PFAM:PF01909
PFAM:PF04926	PFAM:PF04928	PANTHER:PTHR10682	PANTHER:PTHR10682:SF29	InterPro:PolA_pol_RNA-bd_dom	InterPro:PolA_pol_cen_dom
InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631	TMHMM:TMhelix
EnsemblPlantsGene:TraesCS4D01G067100	EnsemblPlants:TraesCS4D01G067100.1	TIGR:cd05402	SEG:seg	:	:

Description

No Description!

Coordinates

chr4D:-:42288334..42292942

Molecular Weight (calculated)

81571.6 Da

IEP (calculated)

6.916

GRAVY (calculated)

-0.407

Length

729 amino acids

Sequence
(BLAST)

001: MVKSNTGYLG VSEPISLGGP TEKDVVQTAE VEKFLADAGL YESQEEAVSR EEVLGKLDQT VKTWIKKATR VSGYGEQFVQ EANAKIFTFG SYRLGVHGPG
101: ADIDTLCVGP RHATRNDYFF RCLHDMLAEM PEVSELHPVP DAHVPVLGFK LCGVSIDLLY ANLAHVVIPD DLDLSQDSIL HNVDEQAVRS LNGCRVTDQI
201: LRLVPNIPSF RTTLRFMRYW GKRRGVYSNV MGFLGGINWA ILVARICQLY PNASPSMLIS RFFRVYSQWK WPNPVTLCHI EEGPLGLPVW DPRRNFRDRG
301: HQMPIITPAY PCMNSSYNVS TSTRYVMVQE FTRGYEICQA IDENRATWDD LFEPYPFFEL YKNYLEVGIT ARNEDDLRNW KGWVESRLRT LVLKFERYTH
401: EMLLAHPHPR DFSDGSRPLH SFYFMGLWRK QTAQPQEAEQ FDIRGIVNEF KNAVLAYAHR REGMDIEVSH VKRKDIPLFV FPGGVRPPRS SRTVARSSRT
501: VSRNVVTADG QVGNQLGAES WSDPQSALDH SGGYQSTSLL VPSVSSKETQ SILNGHSNLH TESLEHEHPG HFLGSTSAPA NIAVLDVVTQ PNSMPSTSSN
601: GAPTNGLDIC FNSLHREAER IPANNPVNFS PAVVDELDEL ASYQAKPDDK HVLPVHGTSL EGCSGRTVGQ TCNLSSHGNN HLKRKAEEEL EPLELAGPPV
701: GATRASTSTV QRKPLRLRLS TVPQPKQAK

Best Arabidopsis Sequence Match ( AT1G17980.1 )
(BLAST)

001: MASVQQNGQR FGVSEPISMG GPTEFDVIKT RELEKHLQDV GLYESKEEAV RREEVLGILD QIVKTWIKTI SRAKGLNDQL LHEANAKIFT FGSYRLGVHG
101: PGADIDTLCV GPRHATREGD FFGELQRMLS EMPEVTELHP VPDAHVPLMG FKLNGVSIDL LYAQLPLWVI PEDLDLSQDS ILQNADEQTV RSLNGCRVTD
201: QILRLVPNIQ NFRTTLRCMR FWAKRRGVYS NVSGFLGGIN WALLVARICQ LYPNALPNIL VSRFFRVFYQ WNWPNAIFLC SPDEGSLGLQ VWDPRINPKD
301: RLHIMPIITP AYPCMNSSYN VSESTLRIMK GEFQRGNEIC EAMESNKADW DTLFEPFAFF EAYKNYLQID ISAANVDDLR KWKGWVESRL RQLTLKIERH
401: FKMLHCHPHP HDFQDTSRPL HCSYFMGLQR KQGVPAAEGE QFDIRRTVEE FKHTVNAYTL WIPGMEISVG HIKRRSLPNF VFPGGVRPSH TSKGTWDSNR
501: RSEHRNSSTS SAPAATTTTT EMSSESKAGS NSPVDGKKRK WGDSETLTDQ PRNSKHIAVS VPVENCEGGS PNPSVGSICS SPMKDYCTNG KSEPISKDPP
601: ENVVAFSKDP PESLPIEKIA TPQAHETEEL EESFDFGNQV IEQISHKVAV LSATATIPPF EATSNGSPFP YEAVEELEVL PTRQPDAAHR PSVQQRKPII
701: KLSFTSLGKT NGK

Arabidopsis Description

PAPS1Nuclear poly(A) polymerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.