Factsheet for Bra016573.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96740	Canola	nucleus	100.0	97.05
Bra031010.1-P	Field mustard	nucleus	87.57	87.95
AT1G17980.1	Thale cress	nucleus	84.68	82.19
Bra024894.1-P	Field mustard	nucleus	70.66	72.77
Zm00001d031424_P001	Maize	cytosol	15.9	64.33
VIT_17s0000g03120.t01	Wine grape	cytosol, nucleus, plastid	60.26	64.06
Zm00001d044377_P001	Maize	cytosol	13.87	61.94
Zm00001d040140_P001	Maize	cytosol	16.18	61.88
Zm00001d016073_P001	Maize	cytosol	16.18	58.95
Os06t0319600-01	Rice	cytosol	10.98	58.91
KRH39125	Soybean	nucleus	63.87	58.39
KRH60473	Soybean	cytosol	49.13	57.05
KRH48590	Soybean	nucleus	62.14	56.8
Solyc05g008630.2.1	Tomato	nucleus	54.34	55.13
GSMUA_AchrUn_...	Banana	nucleus	58.81	54.78
PGSC0003DMT400078394	Potato	nucleus	54.19	52.89
Bra011388.1-P	Field mustard	nucleus	31.65	52.39
TraesCS4A01G246800.1	Wheat	nucleus	51.88	49.31
TraesCS4D01G067100.1	Wheat	nucleus	51.73	49.11
TraesCS4B01G068100.1	Wheat	nucleus	51.59	48.97
HORVU4Hr1G011370.8	Barley	nucleus	51.73	47.35
Zm00001d033448_P004	Maize	nucleus	50.43	46.85
EER93704	Sorghum	cytosol	50.58	46.67
Zm00001d013599_P016	Maize	nucleus	50.43	46.53
Bra034276.1-P	Field mustard	cytosol	47.11	42.28
Bra029588.1-P	Field mustard	nucleus	22.25	29.96

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	EnsemblPlantsGene:Bra016573	EnsemblPlants:Bra016573.1
EnsemblPlants:Bra016573.1-P	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004652	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740
GO:GO:0016779	GO:GO:0031123	GO:GO:0043631	GO:GO:0046872	UniProt:M4DJ95	InterPro:NuclTrfase_I-like_C
PFAM:PF01909	PFAM:PF04926	PFAM:PF04928	PIRSF:PIRSF018425	PANTHER:PTHR10682	PANTHER:PTHR10682:SF22
InterPro:PolA_pol_RNA-bd_dom	InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003	SUPFAM:SSF81301
SUPFAM:SSF81631	UniParc:UPI0002547106	SEG:seg	:	:	:

Description

AT1G17980 (E=4e-203) | nucleotidyltransferase family protein

Coordinates

chrA08:+:19115906..19119167

Molecular Weight (calculated)

77225.5 Da

IEP (calculated)

6.035

GRAVY (calculated)

-0.480

Length

692 amino acids

Sequence
(BLAST)

001: MANVQQRYGI TEPISLGGPT ELDVVKTREL EKYLQDVGLY EGKEEAVRRE EVLGRLDQIV KTWIKTISRA KGLNDQLLHE ANAEIFTFGS YRLGVHGPGA
101: DIDTLCVGPR HATREGDFFG ELQRMLSEMP EVTELHPVPD AHVPLMGFKL NGISIDLLYA QLPLWVIPKD LDISQDSILQ NADEQTVRSL NGCRVTDQIL
201: RLVPNIEVSG FLGGINWALL VARICQLYPN ALPNMLASRF FRVYTQWRWP NPVLLCSIDG GSFGLQVWDP RRNPKDRLHM MPIITPAYPC MNSSYNVSAS
301: TLRIMTGEFQ RGKDICEAME ANKADWDTLF EPFAFFEAYK NYLQIDISAA NVDDLRKWKG WVESRLRQLT LKIERYTYDM LQCHPHTHDY QDASRPLHCS
401: YFMGLQRKQG VPAAEGEQFD IRRTVEEFKH TVNGYMLWIP GMEIGVSHIK RRSIPSFVFP GGVRPSHASK GTWDSKRRSE NRITSTASAA TATTTNEASS
501: ESKGGSNSSG DGKKRKRGDD ETLTDQLKNS KRLSVSVPVE NGEGGSPDPS GGSVCSSPPK DCCTNGKSDP VIKDPPESVV VFSKDATESH PIEKIATPQA
601: RSQETEELED GFDFGNQVIE QISNKDTFLA ASATILPSET NTSNGSPFSN EAVEELEVLP MPQPEVMHRA SVQQRKPIIK LNFTSLGKTN GK

Best Arabidopsis Sequence Match ( AT1G17980.1 )
(BLAST)

001: MASVQQNGQR FGVSEPISMG GPTEFDVIKT RELEKHLQDV GLYESKEEAV RREEVLGILD QIVKTWIKTI SRAKGLNDQL LHEANAKIFT FGSYRLGVHG
101: PGADIDTLCV GPRHATREGD FFGELQRMLS EMPEVTELHP VPDAHVPLMG FKLNGVSIDL LYAQLPLWVI PEDLDLSQDS ILQNADEQTV RSLNGCRVTD
201: QILRLVPNIQ NFRTTLRCMR FWAKRRGVYS NVSGFLGGIN WALLVARICQ LYPNALPNIL VSRFFRVFYQ WNWPNAIFLC SPDEGSLGLQ VWDPRINPKD
301: RLHIMPIITP AYPCMNSSYN VSESTLRIMK GEFQRGNEIC EAMESNKADW DTLFEPFAFF EAYKNYLQID ISAANVDDLR KWKGWVESRL RQLTLKIERH
401: FKMLHCHPHP HDFQDTSRPL HCSYFMGLQR KQGVPAAEGE QFDIRRTVEE FKHTVNAYTL WIPGMEISVG HIKRRSLPNF VFPGGVRPSH TSKGTWDSNR
501: RSEHRNSSTS SAPAATTTTT EMSSESKAGS NSPVDGKKRK WGDSETLTDQ PRNSKHIAVS VPVENCEGGS PNPSVGSICS SPMKDYCTNG KSEPISKDPP
601: ENVVAFSKDP PESLPIEKIA TPQAHETEEL EESFDFGNQV IEQISHKVAV LSATATIPPF EATSNGSPFP YEAVEELEVL PTRQPDAAHR PSVQQRKPII
701: KLSFTSLGKT NGK

Arabidopsis Description

PAPS1Nuclear poly(A) polymerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.